Detail information of GWHGAAZE027810


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010664057.10PREDICTED: regulator of nonsense transcripts 1 homolog isoform X1 [Vitis vinifera]
COGNP_214409.16E-67DNA helicase
Swissprottr|Q9FJR0|RENT1_ARATH0Regulator of nonsense transcripts 1 homolog
trEMBLtr|D7TTH5|D7TTH5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI33955.3}
TAIR10AT5G47010.10RNA helicase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2881175228830354-
GWHAAZE00000008mRNA2881175228830354-
GWHAAZE00000008exon2882982928830354-
GWHAAZE00000008exon2882771128827962-
GWHAAZE00000008exon2882730728827477-
GWHAAZE00000008exon2882664728826697-
GWHAAZE00000008exon2882644828826540-
GWHAAZE00000008exon2882619828826293-
GWHAAZE00000008exon2882564528825695-
GWHAAZE00000008exon2882545228825570-
GWHAAZE00000008exon2882396428824072-
GWHAAZE00000008exon2882267128822793-
GWHAAZE00000008exon2882252128822592-
GWHAAZE00000008exon2882156028821631-
GWHAAZE00000008exon2882138828821454-
GWHAAZE00000008exon2882098228821124-
GWHAAZE00000008exon2882082628820897-
GWHAAZE00000008exon2882061528820743-
GWHAAZE00000008exon2881815028818305-
GWHAAZE00000008exon2881752328817636-
GWHAAZE00000008exon2881731328817411-
GWHAAZE00000008exon2881713128817208-
GWHAAZE00000008exon2881617728816311-
GWHAAZE00000008exon2881567328815747-
GWHAAZE00000008exon2881543028815547-
GWHAAZE00000008exon2881416728814537-
GWHAAZE00000008exon2881314828813210-
GWHAAZE00000008exon2881298828813059-
GWHAAZE00000008exon2881238728812518-
GWHAAZE00000008exon2881188928812011-
GWHAAZE00000008exon2881175228811820-
GWHAAZE00000008five_prime_UTR2883031228830354-
GWHAAZE00000008CDS2882982928830311-
GWHAAZE00000008CDS2882771128827962-
GWHAAZE00000008CDS2882730728827477-
GWHAAZE00000008CDS2882664728826697-
GWHAAZE00000008CDS2882644828826540-
GWHAAZE00000008CDS2882619828826293-
GWHAAZE00000008CDS2882564528825695-
GWHAAZE00000008CDS2882545228825570-
GWHAAZE00000008CDS2882396428824072-
GWHAAZE00000008CDS2882267128822793-
GWHAAZE00000008CDS2882252128822592-
GWHAAZE00000008CDS2882156028821631-
GWHAAZE00000008CDS2882138828821454-
GWHAAZE00000008CDS2882098228821124-
GWHAAZE00000008CDS2882082628820897-
GWHAAZE00000008CDS2882061528820743-
GWHAAZE00000008CDS2881815028818305-
GWHAAZE00000008CDS2881752328817636-
GWHAAZE00000008CDS2881731328817411-
GWHAAZE00000008CDS2881713128817208-
GWHAAZE00000008CDS2881617728816311-
GWHAAZE00000008CDS2881567328815747-
GWHAAZE00000008CDS2881543028815547-
GWHAAZE00000008CDS2881416728814537-
GWHAAZE00000008CDS2881314828813210-
GWHAAZE00000008CDS2881298828813059-
GWHAAZE00000008CDS2881238728812518-
GWHAAZE00000008CDS2881188928812011-
GWHAAZE00000008CDS2881175228811820-
Transcript Sequence

Network for GWHGAAZE027810

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09416.11UPF1_Zn_bind1202733.60E-73
PF18141.2DUF55993254143.90E-30
PF04851.16ResIII4745493.00E-05
PF13086.7AAA_115736732.40E-28
PF13087.7AAA_126838783.10E-59
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14326UPF1, RENT1 RNA transport map03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName
GO:0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.207
SRR3591706second leaf16.415
SRR3591707mature leaf20.435
SRR3591708Shoot apex20.428
SRR3591709Stem23.402
SRR3591710White floral bud30.232
SRR3591711White flower36.986
SRR3591712Green floral bud22.874
SRR3591713Yellow flower33.126
SRP173429 SRR8316895Juvenile bud stage 15.703
SRR8316896Juvenile bud stage 21.905
SRR8316897Juvenile bud stage 12.416
SRR8316894Third green stage 9.675
SRR8316900Third green stage 22.115
SRR8316901Third green stage 22.116
SRR8316898Complete white stage 8.156
SRR8316899Complete white stage 26.229
SRR8316903Complete white stage 22.696
SRR8316902Silver flowering stage14.375
SRR8316904Silver flowering stage21.848
SRR8316905Silver flowering stage9.362
SRR8316906Gold flowering stage 29.685
SRR8316907Gold flowering stage 26.292
SRR8316908Gold flowering stage 31.118
SRP132670SRR6706286Control29.589
SRR6706287Light intensity 50%30.113
SRR6706288Light intensity 20%30.943
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.713
CNS0095593Slightly white alabastrum(diploid) 210.361
CNS0095594Slightly white alabastrum(diploid) 38.769
CNS0095595Whole white alabastrum(diploid) 28.195
CNS0095596Whole white alabastrum(diploid) 35.840
CNS0095597Whole white alabastrum(diploid) 48.195
CNS0095598Silvery flower (diploied) 115.236
CNS0095599Silvery flower (diploied) 212.384
CNS0095600Silvery flower (diploied) 334.412
CNS0095601Golden flower (diploid) 112.242
CNS0095602Golden flower (diploid) 234.623
CNS0095603Golden flower (diploid) 332.050
CNS0095604Slightly white alabastrum(tetraploid) 112.926
CNS0095605Slightly white alabastrum(tetraploid) 210.177
CNS0095606Slightly white alabastrum(tetraploid) 333.276
CNS0095607Whole white alabastrum(tetraploid) 18.701
CNS0095608Whole white alabastrum(tetraploid) 26.082
CNS0095609Whole white alabastrum(tetraploid) 322.811
CNS0095610Silvery flower (tetraploid) 133.305
CNS0095611Silvery flower (tetraploid) 232.530
CNS0095612Silvery flower (tetraploid) 333.385
CNS0095613Golden flower (tetraploid) 114.208
CNS0095614Golden flower (tetraploid) 228.511
CNS0095615Golden flower (tetraploid) 335.975
CRA001975CRR073297Stem 129.350
CRR073298Stem 225.876
CRR073299Stem 324.382
CRR073300Leaf 128.577
CRR073301Leaf 223.188
CRR073302Leaf 320.139
CRR073303Juvenile bud 118.594
CRR073304Juvenile bud 214.639
CRR073305Juvenile bud 329.436
CRR073306Third green 113.994
CRR073307Third green 211.334
CRR073308Third green 315.830
CRR073309Second white 110.242
CRR073310Second white 217.671
CRR073311Second white 325.471
CRR073312Silver flowering 125.661
CRR073313Silver flowering 226.783
CRR073314Silver flowering 324.982
CRR073315Gold flowering 19.849
CRR073316Gold flowering 221.681
CRR073317Gold flowering 39.034
CRR073318Tawny withering 120.293
CRR073319Tawny withering 217.234
CRR073320Tawny withering 314.460