Gene detail

Detail information of GWHGAAZE027803

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007039636.1	1.8954E-117	Receptor protein kinase isoform 2 [Theobroma cacao]
COG	YP_007206260.1	4E-15	WD40 repeat-containing protein
Swissprot	tr\|Q9LTC0\|Y5707_ARATH	3E-71	Probable receptor-like protein kinase At5g47070
trEMBL	tr\|A0A061G4P1\|A0A061G4P1_THECC	7E-118	Receptor protein kinase isoform 2 {ECO:0000313\|EMBL:EOY24137.1}
TAIR10	AT5G47070.1	4E-60	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	28670542	28674252	+
GWHAAZE00000008	mRNA	28670542	28674252	+
GWHAAZE00000008	exon	28670542	28670886	+
GWHAAZE00000008	exon	28673035	28673157	+
GWHAAZE00000008	exon	28673893	28674252	+
GWHAAZE00000008	CDS	28670542	28670886	+
GWHAAZE00000008	CDS	28673035	28673157	+
GWHAAZE00000008	CDS	28673893	28674252	+

Transcript Sequence
>GWHTAAZE027837 ATGAAGTGCTTTTACATCTTCAAGGACAAATCCAAGCCAAATCAAGAAAAATCACCACGAAAACCCAAGAATCAAAGCACCCGGTTGGCTACAAATTCTAAAGATTTGGTTCAATCACCAAGAACTGTTATGGAAATGTATAAACAGAGAGAGAAGAATTTGAGAGTTTTCACTTTCTCAGAGCTGAGAAATGCAACCCATGATTTCAACAAGTTGTTGAAGATTGGGGAAGGTGGTTTTGGGAGGGTTTATAAAGGTTCTATTAAGATTGAAAATGGGCAAGGTGGTGGTGTTGATTCTTCTCTTGTGGTTGCCATTAAAAAGCTTAACAAGCATGGATTGCAGGTGATATATCGAGACTTCAAAGCTTCAAACGTGCTCTTGGACGCGGACTTCAACCCAAAGCTTTCAGATTTTGGGCTTGCTAGGGAAGGGCCTGTTGGGGGTCGTTCCCATGTATCTACTGCACCTATTGGGACATATGGATACGCCGCCCCGGAATACATTGAAACTGGCCATCTCAAAGTAGAGAGTGATATTTGGAGTTTTGGCATCGTGGTCTACGAGATCCTCACCGGCAGGCGGGTATTGGAAAATAACCGCCCCAGGTCAGAGCAGAAGCTTCTAGATTGGGTGAAACAGTTCCCGCATAATGGCAATATGTTTTATATGATAATTGACCCTCGGATCAAGAACCAGTACTCTCTCAGCTCGGCTCGAAAAATTGCCGTGTTGGCGGATACTTGTTTGAACAAGAACCCGAAGGATCGGCCGAAAATGAGTGAAGTTGTGAAGAGATTGGAGCAAGTAATTCAAGAGTTGGAGTGA

Network for GWHGAAZE027803

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	112	265	9.50E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.092
	SRR3591706	second leaf	3.381
	SRR3591707	mature leaf	5.775
	SRR3591708	Shoot apex	5.282
	SRR3591709	Stem	15.843
	SRR3591710	White floral bud	8.861
	SRR3591711	White flower	9.623
	SRR3591712	Green floral bud	13.492
	SRR3591713	Yellow flower	6.801
SRP173429	SRR8316895	Juvenile bud stage	6.037
	SRR8316896	Juvenile bud stage	9.730
	SRR8316897	Juvenile bud stage	7.263
	SRR8316894	Third green stage	1.982
	SRR8316900	Third green stage	6.415
	SRR8316901	Third green stage	6.591
	SRR8316898	Complete white stage	1.815
	SRR8316899	Complete white stage	7.311
	SRR8316903	Complete white stage	2.090
	SRR8316902	Silver flowering stage	1.682
	SRR8316904	Silver flowering stage	2.592
	SRR8316905	Silver flowering stage	1.131
	SRR8316906	Gold flowering stage	5.048
	SRR8316907	Gold flowering stage	3.518
	SRR8316908	Gold flowering stage	4.163
SRP132670	SRR6706286	Control	6.164
	SRR6706287	Light intensity 50%	5.547
	SRR6706288	Light intensity 20%	8.261
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.633
	CNS0095593	Slightly white alabastrum(diploid) 2	3.892
	CNS0095594	Slightly white alabastrum(diploid) 3	7.413
	CNS0095595	Whole white alabastrum(diploid) 2	7.141
	CNS0095596	Whole white alabastrum(diploid) 3	2.999
	CNS0095597	Whole white alabastrum(diploid) 4	4.253
	CNS0095598	Silvery flower (diploied) 1	14.530
	CNS0095599	Silvery flower (diploied) 2	7.163
	CNS0095600	Silvery flower (diploied) 3	7.364
	CNS0095601	Golden flower (diploid) 1	11.031
	CNS0095602	Golden flower (diploid) 2	7.157
	CNS0095603	Golden flower (diploid) 3	6.871
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.533
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.993
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.125
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.926
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.862
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.150
	CNS0095610	Silvery flower (tetraploid) 1	8.314
	CNS0095611	Silvery flower (tetraploid) 2	4.559
	CNS0095612	Silvery flower (tetraploid) 3	4.489
	CNS0095613	Golden flower (tetraploid) 1	5.240
	CNS0095614	Golden flower (tetraploid) 2	6.634
	CNS0095615	Golden flower (tetraploid) 3	2.667
CRA001975	CRR073297	Stem 1	8.139
	CRR073298	Stem 2	6.099
	CRR073299	Stem 3	7.728
	CRR073300	Leaf 1	5.117
	CRR073301	Leaf 2	6.426
	CRR073302	Leaf 3	5.613
	CRR073303	Juvenile bud 1	4.782
	CRR073304	Juvenile bud 2	4.952
	CRR073305	Juvenile bud 3	4.326
	CRR073306	Third green 1	1.161
	CRR073307	Third green 2	1.355
	CRR073308	Third green 3	0.669
	CRR073309	Second white 1	3.158
	CRR073310	Second white 2	1.804
	CRR073311	Second white 3	1.654
	CRR073312	Silver flowering 1	2.240
	CRR073313	Silver flowering 2	2.557
	CRR073314	Silver flowering 3	1.686
	CRR073315	Gold flowering 1	12.164
	CRR073316	Gold flowering 2	15.629
	CRR073317	Gold flowering 3	11.819
	CRR073318	Tawny withering 1	13.895
	CRR073319	Tawny withering 2	23.794
	CRR073320	Tawny withering 3	7.921