Gene detail

Detail information of GWHGAAZE027786

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001267901.1	6.9151E-134	calcineurin B-like protein 01 [Vitis vinifera]
Swissprot	tr\|O81445\|CNBL1_ARATH	2E-123	Calcineurin B-like protein 1
trEMBL	tr\|C4P7Y8\|C4P7Y8_VITVI	3E-134	Calcineurin B-like protein 01 {ECO:0000313\|EMBL:ACQ83555.1}
TAIR10	AT4G17615.1	3E-91	calcineurin B-like protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	27853907	27859369	+
GWHAAZE00000008	mRNA	27853907	27859369	+
GWHAAZE00000008	exon	27853907	27853985	+
GWHAAZE00000008	exon	27855322	27855404	+
GWHAAZE00000008	exon	27856027	27856079	+
GWHAAZE00000008	exon	27856267	27856351	+
GWHAAZE00000008	exon	27856875	27856983	+
GWHAAZE00000008	exon	27857105	27857157	+
GWHAAZE00000008	exon	27858091	27858171	+
GWHAAZE00000008	exon	27858944	27859056	+
GWHAAZE00000008	exon	27859306	27859369	+
GWHAAZE00000008	CDS	27853907	27853985	+
GWHAAZE00000008	CDS	27855322	27855404	+
GWHAAZE00000008	CDS	27856027	27856079	+
GWHAAZE00000008	CDS	27856267	27856351	+
GWHAAZE00000008	CDS	27856875	27856983	+
GWHAAZE00000008	CDS	27857105	27857157	+
GWHAAZE00000008	CDS	27858091	27858171	+
GWHAAZE00000008	CDS	27858944	27859056	+
GWHAAZE00000008	CDS	27859306	27859369	+

Transcript Sequence
>GWHTAAZE027820 ATGGGCTGTTTTCAGTCTAAAGCAAGAAAGCAGTTCCCTGGACACGAGGACCCTGTAGTTCTAGCATCACAAACAGCTTTCAGTGTTAGTGAAGTCGAAGCACTATTTGAGCTATACAAGAGCATTAGCAGTTCCGTGATCGACGATGGGATAATAAATAAGGCGACGTTCATTGCTCTCTCTGTCCCCCCTTCCTTACCTTCAAGGGGTGGAGGAGGATGTCCATATTTGAATATGCAGGAAGAATTTCAATTGGCTTTATTCAAGAACCAAAAGAAAGAGAGTCTTTTTGCAAACCGGATCTTTGATCTTTTTGATGTAAAGAGAAAGGGCGTGATTGACTTTGGTGACTTTGTTAGAACACTGAATGTCTTTCACCCAAATGCCCCACAAGAAGACAAGATTAATTTTTCATTTACGCTTTATGATTTGGACGGCACAGGATTTATTGAGCGGCAAGAGGTTAAGCAAATGGTAATTGCAATTTTATGCGAGTCTGAAATGAAGTTGGCTGATGAGACCATAGAGATAATCCTGGATAAGACATTTTCAGAAGCAGATGTAAATGGAGATGGAAAAATCGATAAATCGGAATGGCACGCTTTTGTGACTCGAAACCCGTCATTGTTGAAGATAATGACACTCCCATATTTGAGGGACATAACTACAACATTTCCAAGTTTTGTGTTCAATTCAGAGGTTGAGGAGCTTGCTACTTAA

Network for GWHGAAZE027786

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.7	EF-hand_7	133	202	4.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06268	PPP3R, CNB	MAPK signaling pathway	map04010
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		C-type lectin receptor signaling pathway	map04625
		Natural killer cell mediated cytotoxicity	map04650
		T cell receptor signaling pathway	map04660
		Th1 and Th2 cell differentiation	map04658
		Th17 cell differentiation	map04659
		B cell receptor signaling pathway	map04662
		Glucagon signaling pathway	map04922
		Oxytocin signaling pathway	map04921
		Renin secretion	map04924
		Glutamatergic synapse	map04724
		Long-term potentiation	map04720
		Axon guidance	map04360
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.973
	SRR3591706	second leaf	33.131
	SRR3591707	mature leaf	31.061
	SRR3591708	Shoot apex	32.616
	SRR3591709	Stem	57.094
	SRR3591710	White floral bud	23.332
	SRR3591711	White flower	24.001
	SRR3591712	Green floral bud	17.013
	SRR3591713	Yellow flower	17.183
SRP173429	SRR8316895	Juvenile bud stage	12.852
	SRR8316896	Juvenile bud stage	17.043
	SRR8316897	Juvenile bud stage	7.869
	SRR8316894	Third green stage	10.003
	SRR8316900	Third green stage	23.161
	SRR8316901	Third green stage	27.708
	SRR8316898	Complete white stage	15.847
	SRR8316899	Complete white stage	37.433
	SRR8316903	Complete white stage	25.417
	SRR8316902	Silver flowering stage	23.122
	SRR8316904	Silver flowering stage	33.364
	SRR8316905	Silver flowering stage	14.266
	SRR8316906	Gold flowering stage	37.444
	SRR8316907	Gold flowering stage	34.918
	SRR8316908	Gold flowering stage	41.927
SRP132670	SRR6706286	Control	5.794
	SRR6706287	Light intensity 50%	7.478
	SRR6706288	Light intensity 20%	7.929
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.815
	CNS0095593	Slightly white alabastrum(diploid) 2	30.826
	CNS0095594	Slightly white alabastrum(diploid) 3	23.247
	CNS0095595	Whole white alabastrum(diploid) 2	23.075
	CNS0095596	Whole white alabastrum(diploid) 3	20.628
	CNS0095597	Whole white alabastrum(diploid) 4	19.986
	CNS0095598	Silvery flower (diploied) 1	23.576
	CNS0095599	Silvery flower (diploied) 2	16.407
	CNS0095600	Silvery flower (diploied) 3	23.361
	CNS0095601	Golden flower (diploid) 1	15.475
	CNS0095602	Golden flower (diploid) 2	17.182
	CNS0095603	Golden flower (diploid) 3	17.334
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.871
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.326
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.676
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.366
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.583
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.356
	CNS0095610	Silvery flower (tetraploid) 1	16.783
	CNS0095611	Silvery flower (tetraploid) 2	10.064
	CNS0095612	Silvery flower (tetraploid) 3	15.270
	CNS0095613	Golden flower (tetraploid) 1	11.111
	CNS0095614	Golden flower (tetraploid) 2	15.958
	CNS0095615	Golden flower (tetraploid) 3	9.380
CRA001975	CRR073297	Stem 1	8.010
	CRR073298	Stem 2	7.495
	CRR073299	Stem 3	7.539
	CRR073300	Leaf 1	11.065
	CRR073301	Leaf 2	9.774
	CRR073302	Leaf 3	10.863
	CRR073303	Juvenile bud 1	9.454
	CRR073304	Juvenile bud 2	9.225
	CRR073305	Juvenile bud 3	7.668
	CRR073306	Third green 1	14.323
	CRR073307	Third green 2	13.236
	CRR073308	Third green 3	15.627
	CRR073309	Second white 1	16.947
	CRR073310	Second white 2	20.648
	CRR073311	Second white 3	14.415
	CRR073312	Silver flowering 1	14.687
	CRR073313	Silver flowering 2	13.527
	CRR073314	Silver flowering 3	15.591
	CRR073315	Gold flowering 1	4.934
	CRR073316	Gold flowering 2	6.773
	CRR073317	Gold flowering 3	3.813
	CRR073318	Tawny withering 1	11.806
	CRR073319	Tawny withering 2	13.312
	CRR073320	Tawny withering 3	10.087