Gene detail

Detail information of GWHGAAZE027785

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006477070.1	0	PREDICTED: serine/threonine-protein kinase SAPK3-like [Citrus sinensis]
COG	NP_109936.1	1E-14	Ser/Thr/Tyr protein kinase
Swissprot	tr\|P0C5D6\|SAPK3_ORYSJ	7E-157	Serine/threonine-protein kinase SAPK3
trEMBL	tr\|A0A067EPA0\|A0A067EPA0_CITSI	4E-180	Uncharacterized protein {ECO:0000313\|EMBL:KDO57024.1}
TAIR10	AT1G60940.2	8E-115	SNF1-related protein kinase 2.10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	27839246	27847616	-
GWHAAZE00000008	mRNA	27839246	27847616	-
GWHAAZE00000008	exon	27847456	27847616	-
GWHAAZE00000008	exon	27844902	27845052	-
GWHAAZE00000008	exon	27842734	27842835	-
GWHAAZE00000008	exon	27842558	27842611	-
GWHAAZE00000008	exon	27842149	27842241	-
GWHAAZE00000008	exon	27841284	27841355	-
GWHAAZE00000008	exon	27840544	27840648	-
GWHAAZE00000008	exon	27840349	27840447	-
GWHAAZE00000008	exon	27839246	27839521	-
GWHAAZE00000008	CDS	27847456	27847616	-
GWHAAZE00000008	CDS	27844902	27845052	-
GWHAAZE00000008	CDS	27842734	27842835	-
GWHAAZE00000008	CDS	27842558	27842611	-
GWHAAZE00000008	CDS	27842149	27842241	-
GWHAAZE00000008	CDS	27841284	27841355	-
GWHAAZE00000008	CDS	27840544	27840648	-
GWHAAZE00000008	CDS	27840349	27840447	-
GWHAAZE00000008	CDS	27839246	27839521	-

Transcript Sequence
>GWHTAAZE027819 ATGCTCTCCGGCGAGGCTCTCTCTCTTCCAGCTGGCTCTCCGGCGTCGACCACCGTCACTCCTCCGGCTCTCACTCTCTTGCCGCCGGAGAGCACGCCGGAGGTGGTGATGGTGGTGAGAGAGATAGAGAGAGGAAGAGAGAGAGGAGGACGTCGCCGGAGTATTCATTCCAATTTGGAGTTTTTGGGGATGGAAGAAAGATATGAGCCTTTGAAAGATCTTGGCACTGGGAATTTTGGAGTGGCTAGGCTGGTGAAGGACAAGAAATCAAAGGAGCTTCTTGCTGTCAAATACATAGAAAGAGGCAAAAAGGTCTTGTTGACTCCAACACATTTAGCTATAGTCATGGAATATGCAGCTGGTGGCGAGCTCTTTGCTAGGATATGCAGTGCTGGTAGATTTAGTGAGGATGAGGCGCGATTTTTCTTCCAACAGTTAATATCTGGCGTCAGCTACTGTCATTCACTGGAAATTTGTCATAGGGATTTGAAACTGGAAAACACTCTCTTGGATGGAAGTCCATCGCCACGTCTTAAAATATGCGATTTCGGTTATTCCAAGTCGGGTTTGTTGCACTCACAACCCAAGTCAACGGTGGGAACGCCAGCATACATTGCCCAGAGGTTCTGTCACATTGCAGATGTGTGGTCTTGCGGTGTGACACTTTATGTGATGTTAGTAGGAGCATACCCTTTTGAGGAACCTGAAGATCCTCGAAATTTCCGAAAAACCATTGGGAGAATAATGAGTGTTCAATACACTATACCCGACTATGTGCGAGTTTCTGCAGATTGTAGGCATCTTCTTTCTCATATTTTTGTTGCCAATCCCTCTAAGAGAATCACCATCCCGGAACTAAAAAAGCATCCGTGGTTCCTAAAAAACATGCCGAAAGAGCTAGTGGAAGGCGAGAAAACGAACTATGAGGAATTGGGCCGTGGTCACCTTCAAACCGTTGAAGAGATAATGCGTATAATACAAGAGGCTAAGATACCGGGTGAAAGGTCCAGAGCCGAAGGTCATTCTGGCATGGGTTCATTGGACCCCGATGACATGGACGGTGACTTGGATTCAGAAATCGATGTTAGTGGCGATTTTGCGGGGTCCGTTTGA

Network for GWHGAAZE027785

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	105	292	9.80E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_OST1L

KEGG pathway

KO	Enzyme	pathway	mapID
K14498	SNRK2	MAPK signaling pathway - plant	map04016
K14498	SNRK2	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.457
	SRR3591706	second leaf	29.818
	SRR3591707	mature leaf	56.645
	SRR3591708	Shoot apex	33.044
	SRR3591709	Stem	84.907
	SRR3591710	White floral bud	120.760
	SRR3591711	White flower	63.108
	SRR3591712	Green floral bud	29.640
	SRR3591713	Yellow flower	12.214
SRP173429	SRR8316895	Juvenile bud stage	18.639
	SRR8316896	Juvenile bud stage	20.673
	SRR8316897	Juvenile bud stage	8.014
	SRR8316894	Third green stage	8.927
	SRR8316900	Third green stage	25.820
	SRR8316901	Third green stage	27.635
	SRR8316898	Complete white stage	68.607
	SRR8316899	Complete white stage	70.696
	SRR8316903	Complete white stage	99.917
	SRR8316902	Silver flowering stage	23.216
	SRR8316904	Silver flowering stage	38.637
	SRR8316905	Silver flowering stage	20.331
	SRR8316906	Gold flowering stage	17.986
	SRR8316907	Gold flowering stage	34.221
	SRR8316908	Gold flowering stage	46.174
SRP132670	SRR6706286	Control	14.101
	SRR6706287	Light intensity 50%	13.750
	SRR6706288	Light intensity 20%	15.202
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.731
	CNS0095593	Slightly white alabastrum(diploid) 2	13.914
	CNS0095594	Slightly white alabastrum(diploid) 3	9.096
	CNS0095595	Whole white alabastrum(diploid) 2	11.984
	CNS0095596	Whole white alabastrum(diploid) 3	7.200
	CNS0095597	Whole white alabastrum(diploid) 4	13.808
	CNS0095598	Silvery flower (diploied) 1	32.818
	CNS0095599	Silvery flower (diploied) 2	26.955
	CNS0095600	Silvery flower (diploied) 3	27.477
	CNS0095601	Golden flower (diploid) 1	17.491
	CNS0095602	Golden flower (diploid) 2	15.426
	CNS0095603	Golden flower (diploid) 3	15.995
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.286
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.455
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.175
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.657
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.943
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.434
	CNS0095610	Silvery flower (tetraploid) 1	43.118
	CNS0095611	Silvery flower (tetraploid) 2	25.710
	CNS0095612	Silvery flower (tetraploid) 3	31.934
	CNS0095613	Golden flower (tetraploid) 1	3.637
	CNS0095614	Golden flower (tetraploid) 2	25.491
	CNS0095615	Golden flower (tetraploid) 3	1.734
CRA001975	CRR073297	Stem 1	15.836
	CRR073298	Stem 2	11.595
	CRR073299	Stem 3	16.180
	CRR073300	Leaf 1	10.115
	CRR073301	Leaf 2	8.563
	CRR073302	Leaf 3	10.436
	CRR073303	Juvenile bud 1	14.655
	CRR073304	Juvenile bud 2	33.875
	CRR073305	Juvenile bud 3	11.921
	CRR073306	Third green 1	20.109
	CRR073307	Third green 2	19.345
	CRR073308	Third green 3	15.139
	CRR073309	Second white 1	9.309
	CRR073310	Second white 2	4.370
	CRR073311	Second white 3	3.154
	CRR073312	Silver flowering 1	1.208
	CRR073313	Silver flowering 2	2.722
	CRR073314	Silver flowering 3	3.914
	CRR073315	Gold flowering 1	10.857
	CRR073316	Gold flowering 2	16.025
	CRR073317	Gold flowering 3	14.504
	CRR073318	Tawny withering 1	24.649
	CRR073319	Tawny withering 2	24.823
	CRR073320	Tawny withering 3	20.021