Detail information of GWHGAAZE027783


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009629397.10PREDICTED: DNA repair endonuclease UVH1 [Nicotiana tomentosiformis]
COGYP_006923025.11E-16Hef nuclease
Swissprottr|Q9LKI5|XPF_ARATH0DNA repair endonuclease UVH1
trEMBLtr|K4CND9|K4CND9_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g077800.2.1}
TAIR10AT5G41150.10Restriction endonuclease, type II-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2776480927776434-
GWHAAZE00000008mRNA2776480927776434-
GWHAAZE00000008exon2776480927765019-
GWHAAZE00000008exon2776619027766413-
GWHAAZE00000008exon2776755327767813-
GWHAAZE00000008exon2776810627768216-
GWHAAZE00000008exon2777033527770699-
GWHAAZE00000008exon2777146027771817-
GWHAAZE00000008exon2777259527772756-
GWHAAZE00000008exon2777295827773043-
GWHAAZE00000008exon2777336527773582-
GWHAAZE00000008exon2777425427774558-
GWHAAZE00000008exon2777580527776434-
GWHAAZE00000008CDS2777580527776434-
GWHAAZE00000008CDS2777425427774558-
GWHAAZE00000008CDS2777336527773582-
GWHAAZE00000008CDS2777295827773043-
GWHAAZE00000008CDS2777259527772756-
GWHAAZE00000008CDS2777146027771817-
GWHAAZE00000008CDS2777033527770699-
GWHAAZE00000008CDS2776810627768216-
GWHAAZE00000008CDS2776755327767813-
GWHAAZE00000008CDS2776619027766413-
GWHAAZE00000008CDS2776480927765019-
Transcript Sequence

Network for GWHGAAZE027783

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02732.16ERCC47488772.50E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10848ERCC4, XPF Nucleotide excision repair map03420
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding
GO:0004518molecular_functionnuclease activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.370
SRR3591706second leaf7.228
SRR3591707mature leaf7.574
SRR3591708Shoot apex10.154
SRR3591709Stem9.158
SRR3591710White floral bud10.999
SRR3591711White flower10.231
SRR3591712Green floral bud10.415
SRR3591713Yellow flower9.407
SRP173429 SRR8316895Juvenile bud stage 6.818
SRR8316896Juvenile bud stage 10.672
SRR8316897Juvenile bud stage 4.479
SRR8316894Third green stage 5.120
SRR8316900Third green stage 11.305
SRR8316901Third green stage 11.153
SRR8316898Complete white stage 3.250
SRR8316899Complete white stage 12.251
SRR8316903Complete white stage 8.976
SRR8316902Silver flowering stage4.233
SRR8316904Silver flowering stage7.255
SRR8316905Silver flowering stage3.312
SRR8316906Gold flowering stage 11.101
SRR8316907Gold flowering stage 9.883
SRR8316908Gold flowering stage 10.704
SRP132670SRR6706286Control8.755
SRR6706287Light intensity 50%9.862
SRR6706288Light intensity 20%9.766
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.021
CNS0095593Slightly white alabastrum(diploid) 24.266
CNS0095594Slightly white alabastrum(diploid) 36.938
CNS0095595Whole white alabastrum(diploid) 26.726
CNS0095596Whole white alabastrum(diploid) 36.134
CNS0095597Whole white alabastrum(diploid) 48.334
CNS0095598Silvery flower (diploied) 15.802
CNS0095599Silvery flower (diploied) 25.933
CNS0095600Silvery flower (diploied) 38.289
CNS0095601Golden flower (diploid) 14.691
CNS0095602Golden flower (diploid) 27.909
CNS0095603Golden flower (diploid) 37.483
CNS0095604Slightly white alabastrum(tetraploid) 17.575
CNS0095605Slightly white alabastrum(tetraploid) 27.502
CNS0095606Slightly white alabastrum(tetraploid) 310.977
CNS0095607Whole white alabastrum(tetraploid) 17.511
CNS0095608Whole white alabastrum(tetraploid) 26.952
CNS0095609Whole white alabastrum(tetraploid) 39.197
CNS0095610Silvery flower (tetraploid) 18.370
CNS0095611Silvery flower (tetraploid) 27.731
CNS0095612Silvery flower (tetraploid) 37.183
CNS0095613Golden flower (tetraploid) 14.450
CNS0095614Golden flower (tetraploid) 27.402
CNS0095615Golden flower (tetraploid) 37.237
CRA001975CRR073297Stem 18.141
CRR073298Stem 28.549
CRR073299Stem 34.974
CRR073300Leaf 19.166
CRR073301Leaf 28.247
CRR073302Leaf 34.780
CRR073303Juvenile bud 14.764
CRR073304Juvenile bud 23.723
CRR073305Juvenile bud 37.417
CRR073306Third green 12.157
CRR073307Third green 21.388
CRR073308Third green 31.767
CRR073309Second white 11.941
CRR073310Second white 22.928
CRR073311Second white 33.258
CRR073312Silver flowering 13.832
CRR073313Silver flowering 23.091
CRR073314Silver flowering 32.440
CRR073315Gold flowering 11.770
CRR073316Gold flowering 24.341
CRR073317Gold flowering 32.025
CRR073318Tawny withering 15.233
CRR073319Tawny withering 25.303
CRR073320Tawny withering 33.145