Gene detail

Detail information of GWHGAAZE027780

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008244458.1	4.9785E-178	PREDICTED: ureidoglycine aminohydrolase [Prunus mume]
COG	YP_003685172.1	2E-61	cupin
Swissprot	tr\|Q8GXV5\|UGHY_ARATH	1E-173	(S)-ureidoglycine aminohydrolase (Precursor)
trEMBL	tr\|M5WMV3\|M5WMV3_PRUPE	7E-178	Uncharacterized protein {ECO:0000313\|EMBL:EMJ10613.1}
TAIR10	AT4G17050.1	8E-138	ureidoglycine aminohydrolase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	27717139	27723072	+
GWHAAZE00000008	mRNA	27717139	27723072	+
GWHAAZE00000008	exon	27717139	27717265	+
GWHAAZE00000008	exon	27718584	27718671	+
GWHAAZE00000008	exon	27718758	27718834	+
GWHAAZE00000008	exon	27719255	27719294	+
GWHAAZE00000008	exon	27719467	27719533	+
GWHAAZE00000008	exon	27719983	27720068	+
GWHAAZE00000008	exon	27720610	27720691	+
GWHAAZE00000008	exon	27720836	27720892	+
GWHAAZE00000008	exon	27721554	27721592	+
GWHAAZE00000008	exon	27722213	27722283	+
GWHAAZE00000008	exon	27722870	27722923	+
GWHAAZE00000008	exon	27723003	27723072	+
GWHAAZE00000008	CDS	27717139	27717265	+
GWHAAZE00000008	CDS	27718584	27718671	+
GWHAAZE00000008	CDS	27718758	27718834	+
GWHAAZE00000008	CDS	27719255	27719294	+
GWHAAZE00000008	CDS	27719467	27719533	+
GWHAAZE00000008	CDS	27719983	27720068	+
GWHAAZE00000008	CDS	27720610	27720691	+
GWHAAZE00000008	CDS	27720836	27720892	+
GWHAAZE00000008	CDS	27721554	27721592	+
GWHAAZE00000008	CDS	27722213	27722283	+
GWHAAZE00000008	CDS	27722870	27722923	+
GWHAAZE00000008	CDS	27723003	27723072	+

Transcript Sequence
>GWHTAAZE027814 GTGCTCAAAATAGCAACTGCCCAAGAAGGGTTTTGTTCTGCACCCCCAATCTTGACTACTCACATAGATTCTCAACCTCTCTATTGGAAAGCCACCAACCCCACTCTCTCTCCTTCTCATTTACAAGACTTACCGGGGTTCACCCGCAGTGTATATAAGAGAGATCATGCTTTAATCACACCTGAAAGTCATGTTTTCAGCCCGTTACCTGATTGGACCAATACACTTGGAGCATATTTAATAACGCCAGCAACGGGGTCACATTTCGTTATGTACCTAGCAAAGATGCAAGAAAACTCAAATTCGGGTCTCCCTCCAAACAATGTTGAGAGGTTCATATTTGTCATTCAGGGTGAGCTGACATTCACCAATGTTTCTGGCATCGACTATGTGCTGAAGGTGGATTCATATGCTTACCTTCCTCCTAATTCAGAACACTCCCTTCAGTGTGATGACTCTGCTACTCTCGTTGTATTTGAAAGAAGGTATGCCTACGTGGAAAATCATAGCACTGAGCAGATTGTTAGTTCAACTGACAAACAGCCTCTTCTTGAAACTCCTGGCGAGGTTTTTGAACTCAGGAAGCTTCTTCCCACATCTGTGCCTTATGACTTCAACATTCATATCATGGACTTTCAGCCAGGAGAATTTCTTAATGTGAAGGAGGTCCATTATAATCAGCATGGTATGCTGATTTTAGAGGGACAAGGTGTTTATCGCCTAGGCGATAGTTGGTACCCAGTTCAAGCTGGTGATGCCATTTGGATGGCACCCTTTGTGCCTCAATGGTATGCCGCTCTTGGTAAAACTCGCACGCGCTATTTGCTGTACAAAGATGTGAACAGGAATCCACTGTGA

Network for GWHGAAZE027780

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07883.12	Cupin_2	106	158	1.00E-06
PF07883.12	Cupin_2	209	275	1.90E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14977	ylbA, UGHY	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.771
	SRR3591706	second leaf	29.453
	SRR3591707	mature leaf	17.896
	SRR3591708	Shoot apex	19.272
	SRR3591709	Stem	22.515
	SRR3591710	White floral bud	15.287
	SRR3591711	White flower	9.338
	SRR3591712	Green floral bud	10.793
	SRR3591713	Yellow flower	4.678
SRP173429	SRR8316895	Juvenile bud stage	22.963
	SRR8316896	Juvenile bud stage	29.240
	SRR8316897	Juvenile bud stage	14.157
	SRR8316894	Third green stage	13.353
	SRR8316900	Third green stage	37.772
	SRR8316901	Third green stage	35.715
	SRR8316898	Complete white stage	28.418
	SRR8316899	Complete white stage	48.261
	SRR8316903	Complete white stage	42.558
	SRR8316902	Silver flowering stage	21.766
	SRR8316904	Silver flowering stage	26.735
	SRR8316905	Silver flowering stage	11.330
	SRR8316906	Gold flowering stage	27.568
	SRR8316907	Gold flowering stage	29.105
	SRR8316908	Gold flowering stage	21.635
SRP132670	SRR6706286	Control	11.562
	SRR6706287	Light intensity 50%	12.975
	SRR6706288	Light intensity 20%	13.174
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.103
	CNS0095593	Slightly white alabastrum(diploid) 2	27.961
	CNS0095594	Slightly white alabastrum(diploid) 3	26.866
	CNS0095595	Whole white alabastrum(diploid) 2	25.669
	CNS0095596	Whole white alabastrum(diploid) 3	21.657
	CNS0095597	Whole white alabastrum(diploid) 4	21.799
	CNS0095598	Silvery flower (diploied) 1	21.973
	CNS0095599	Silvery flower (diploied) 2	20.456
	CNS0095600	Silvery flower (diploied) 3	31.201
	CNS0095601	Golden flower (diploid) 1	19.896
	CNS0095602	Golden flower (diploid) 2	27.479
	CNS0095603	Golden flower (diploid) 3	23.422
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.489
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.009
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.233
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.501
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.299
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.637
	CNS0095610	Silvery flower (tetraploid) 1	11.560
	CNS0095611	Silvery flower (tetraploid) 2	13.845
	CNS0095612	Silvery flower (tetraploid) 3	17.689
	CNS0095613	Golden flower (tetraploid) 1	5.000
	CNS0095614	Golden flower (tetraploid) 2	9.660
	CNS0095615	Golden flower (tetraploid) 3	8.303
CRA001975	CRR073297	Stem 1	23.274
	CRR073298	Stem 2	17.232
	CRR073299	Stem 3	20.625
	CRR073300	Leaf 1	24.133
	CRR073301	Leaf 2	19.328
	CRR073302	Leaf 3	19.522
	CRR073303	Juvenile bud 1	23.715
	CRR073304	Juvenile bud 2	22.948
	CRR073305	Juvenile bud 3	29.871
	CRR073306	Third green 1	20.189
	CRR073307	Third green 2	20.122
	CRR073308	Third green 3	22.426
	CRR073309	Second white 1	24.157
	CRR073310	Second white 2	19.870
	CRR073311	Second white 3	13.696
	CRR073312	Silver flowering 1	11.381
	CRR073313	Silver flowering 2	8.826
	CRR073314	Silver flowering 3	5.615
	CRR073315	Gold flowering 1	15.317
	CRR073316	Gold flowering 2	19.178
	CRR073317	Gold flowering 3	11.972
	CRR073318	Tawny withering 1	20.942
	CRR073319	Tawny withering 2	19.951
	CRR073320	Tawny withering 3	24.780