Gene detail

Detail information of GWHGAAZE027741

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010053493.1	1.7456E-115	PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Eucalyptus grandis]
COG	NP_214247.1	2E-43	formyltetrahydrofolate deformylase
Swissprot	tr\|Q93YQ3\|PURU1_ARATH	1E-109	Formyltetrahydrofolate deformylase 1, mitochondrial (Precursor)
trEMBL	tr\|A0A059CIP6\|A0A059CIP6_EUCGR	7E-116	Uncharacterized protein {ECO:0000313\|EMBL:KCW77805.1}
TAIR10	AT5G47435.2	2E-88	formyltetrahydrofolate deformylase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	26438026	26439938	-
GWHAAZE00000008	mRNA	26438026	26439938	-
GWHAAZE00000008	exon	26438026	26438142	-
GWHAAZE00000008	exon	26438245	26438343	-
GWHAAZE00000008	exon	26439107	26439266	-
GWHAAZE00000008	exon	26439349	26439422	-
GWHAAZE00000008	exon	26439759	26439938	-
GWHAAZE00000008	CDS	26439759	26439938	-
GWHAAZE00000008	CDS	26439349	26439422	-
GWHAAZE00000008	CDS	26439107	26439266	-
GWHAAZE00000008	CDS	26438245	26438343	-
GWHAAZE00000008	CDS	26438026	26438142	-

Transcript Sequence
>GWHTAAZE027775 ATGCTCACTGATCCTGCTACAACTTACAGTGAATTTATATTTGATTCTGCTAAATGGCCTCGGGACCAAATGGACCAGGACTTCCTCAATCTATCAAAGAAGTACAATGCATTTAAGTCTGTTGTTCGGGTGCCTGTCCAAGATCCCAAATATAAGATTGCGGTTCTTGCTTCAAAGCAGGACCACTGTCTTGTTGATCTATTGCATGGGTTACAGGATGGAAGGGTTCCGGTTCATTTAGATTGTGTGATAAGTAATCATGAGAGAGGTCCAAACACCCATGTGATTCGATTTCTTGAAAGGAATGGAATACCATATCATTATTTGCGCACTACAAAGGATAGCAAAAGAGAAGAAGATATTTTGGAGTTGGTTAAAGATACTGATTTTCTGGTACTTGCTAGATACATGCAGGTATTGTCTGGAAATTTCCTAAGAAGCTACGGGAAGGATATAATTAACATTCACCATGGCCTATTGCCATCATTCAAGGGAGGGAGTCCTTCTAGACAGGCATTTGAAGCTGGTGTTAAATTGATTGGTGCAACAAGCCACTTTGTCAGGGAAGAACTTGATTCTGGGCCAATCATCGAACAAATGGTGATTATTCTCATCTTTACCATTGCTTAA

Network for GWHGAAZE027741

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00551.20	Formyl_trans_N	52	202	1.80E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01433	purU	Glyoxylate and dicarboxylate metabolism	map00630
K01433	purU	One carbon pool by folate	map00670

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0016742	molecular_function	hydroxymethyl-, formyl- and related transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.061
	SRR3591706	second leaf	27.203
	SRR3591707	mature leaf	26.588
	SRR3591708	Shoot apex	19.137
	SRR3591709	Stem	23.234
	SRR3591710	White floral bud	11.122
	SRR3591711	White flower	9.822
	SRR3591712	Green floral bud	12.723
	SRR3591713	Yellow flower	7.869
SRP173429	SRR8316895	Juvenile bud stage	7.399
	SRR8316896	Juvenile bud stage	12.376
	SRR8316897	Juvenile bud stage	5.376
	SRR8316894	Third green stage	5.008
	SRR8316900	Third green stage	10.244
	SRR8316901	Third green stage	10.036
	SRR8316898	Complete white stage	2.534
	SRR8316899	Complete white stage	10.187
	SRR8316903	Complete white stage	4.421
	SRR8316902	Silver flowering stage	1.849
	SRR8316904	Silver flowering stage	3.724
	SRR8316905	Silver flowering stage	1.864
	SRR8316906	Gold flowering stage	6.129
	SRR8316907	Gold flowering stage	5.808
	SRR8316908	Gold flowering stage	4.404
SRP132670	SRR6706286	Control	2.282
	SRR6706287	Light intensity 50%	2.288
	SRR6706288	Light intensity 20%	2.630
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.544
	CNS0095593	Slightly white alabastrum(diploid) 2	12.173
	CNS0095594	Slightly white alabastrum(diploid) 3	14.217
	CNS0095595	Whole white alabastrum(diploid) 2	15.114
	CNS0095596	Whole white alabastrum(diploid) 3	14.941
	CNS0095597	Whole white alabastrum(diploid) 4	9.441
	CNS0095598	Silvery flower (diploied) 1	11.344
	CNS0095599	Silvery flower (diploied) 2	8.653
	CNS0095600	Silvery flower (diploied) 3	6.777
	CNS0095601	Golden flower (diploid) 1	8.742
	CNS0095602	Golden flower (diploid) 2	6.269
	CNS0095603	Golden flower (diploid) 3	5.792
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.168
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.609
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.999
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.773
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.117
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.516
	CNS0095610	Silvery flower (tetraploid) 1	6.541
	CNS0095611	Silvery flower (tetraploid) 2	6.148
	CNS0095612	Silvery flower (tetraploid) 3	6.335
	CNS0095613	Golden flower (tetraploid) 1	2.742
	CNS0095614	Golden flower (tetraploid) 2	4.989
	CNS0095615	Golden flower (tetraploid) 3	1.126
CRA001975	CRR073297	Stem 1	8.706
	CRR073298	Stem 2	6.420
	CRR073299	Stem 3	6.107
	CRR073300	Leaf 1	5.454
	CRR073301	Leaf 2	4.570
	CRR073302	Leaf 3	3.035
	CRR073303	Juvenile bud 1	3.458
	CRR073304	Juvenile bud 2	2.251
	CRR073305	Juvenile bud 3	1.352
	CRR073306	Third green 1	1.432
	CRR073307	Third green 2	2.239
	CRR073308	Third green 3	2.214
	CRR073309	Second white 1	1.470
	CRR073310	Second white 2	0.796
	CRR073311	Second white 3	0.952
	CRR073312	Silver flowering 1	1.885
	CRR073313	Silver flowering 2	0.918
	CRR073314	Silver flowering 3	1.264
	CRR073315	Gold flowering 1	17.115
	CRR073316	Gold flowering 2	21.415
	CRR073317	Gold flowering 3	5.325
	CRR073318	Tawny withering 1	6.363
	CRR073319	Tawny withering 2	5.007
	CRR073320	Tawny withering 3	5.399