Gene detail

Detail information of GWHGAAZE027702

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009767189.1	0	PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic-like [Nicotiana sylvestris]
COG	YP_007053262.1	7E-133	3-oxoacyl-(acyl-carrier-protein) synthase III
Swissprot	tr\|P49244\|FABH1_CUPWR	0	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic (Precursor)
trEMBL	tr\|M4QSR7\|M4QSR7_9ERIC	0	Ketoacyl-ACP synthase III {ECO:0000313\|EMBL:AGH32918.1}
TAIR10	AT1G62640.2	6E-159	3-ketoacyl-acyl carrier protein synthase III

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	25833671	25840010	+
GWHAAZE00000008	mRNA	25833671	25840010	+
GWHAAZE00000008	exon	25833671	25833827	+
GWHAAZE00000008	exon	25835567	25835703	+
GWHAAZE00000008	exon	25836185	25836290	+
GWHAAZE00000008	exon	25836413	25836531	+
GWHAAZE00000008	exon	25837491	25837555	+
GWHAAZE00000008	exon	25837643	25837865	+
GWHAAZE00000008	exon	25839789	25840010	+
GWHAAZE00000008	CDS	25833671	25833827	+
GWHAAZE00000008	CDS	25835567	25835703	+
GWHAAZE00000008	CDS	25836185	25836290	+
GWHAAZE00000008	CDS	25836413	25836531	+
GWHAAZE00000008	CDS	25837491	25837555	+
GWHAAZE00000008	CDS	25837643	25837865	+
GWHAAZE00000008	CDS	25839789	25840010	+

Transcript Sequence
>GWHTAAZE027736 ATGTACAGACTTGTCGGTAAAGGCTGCAAACTAGTTGGATGTGGCTCTGCAGTACCAAAATTTCAGGTTTCCAATGACGATCTTGCAAAATTCGTTGAAACTAATGATGAATGGATTTCTGTTCGCACTGGAATACGTAATCGACGAGTTCTTACAGGAGATGATAGCTTGACGGGTCTTGCAATAGAGTCAGCAAGGAAAGCTCTTGAGATGGCACAGGTTGATGCTGACGACGTGGACCTAGTCTTATTGTGTACCTCAACTCCAGAGGATCTTTTTGGCAGTGCTCCTCAGATCCAAAAAGCACTTGGATGCAAAAAGAATCCATTGGCTTACGATATTACAGCTGCCTGTAGCGGGTTTGTCTTGGGTCTTGTTTCGGCTTCTTGTTATATTAGAGGAGGTGGATTCAAAAATGTTCTTGTGATTGGGGCTGATGCTCTTTCTCGTTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGAGACGCTGCTGGTGCTGTATTACTACAGGCCTGTGATAGCAAGGAGGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGTGATGGCCAAAGACACTTAAATGCTGCCATTAAAGTGAAGGAAACTGATCATGCTGCAGAATCTAACGGTTCAGTTTTAGGGTTCCCACCGAAGAGTTCCTCTTATTCGTGTATTCAAATGAATGGTAATGAAGTCTTTCGATTCGCTGTTCGTGTTGTACCACAGACCATTGAGTCTTCCCTACAAAAGGCTGGCCTCACTTCGTCTAGCATTGATTGGTTGCTGCTCCATCAGGCCAACAAGAGGATCCTCGATGCAGTGGCAACGCGTCTAGAAATCCCATTGGAGCGTGTCATATCAAACTTGGCGAATTATGGTAACACAAGTGCAGCGTCCATTCCTTTGGCTTTAGACGAAGCCGTTCGAAGTGGGAAGGTGCAGCCTGGCCATACTATTGCTGCTGCTGGTTTCGGGGCTGGTCTTACATGGGGCTCAGCCATCCTTAGATGGGGATGA

Network for GWHGAAZE027702

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08545.11	ACP_syn_III	112	191	4.00E-29
PF08541.11	ACP_syn_III_C	252	341	8.40E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00648	fabH	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0004315	molecular_function	3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.673
	SRR3591706	second leaf	40.076
	SRR3591707	mature leaf	17.761
	SRR3591708	Shoot apex	42.306
	SRR3591709	Stem	22.034
	SRR3591710	White floral bud	56.333
	SRR3591711	White flower	86.010
	SRR3591712	Green floral bud	53.790
	SRR3591713	Yellow flower	129.073
SRP173429	SRR8316895	Juvenile bud stage	24.405
	SRR8316896	Juvenile bud stage	36.939
	SRR8316897	Juvenile bud stage	19.947
	SRR8316894	Third green stage	14.571
	SRR8316900	Third green stage	56.155
	SRR8316901	Third green stage	45.341
	SRR8316898	Complete white stage	24.155
	SRR8316899	Complete white stage	49.699
	SRR8316903	Complete white stage	38.733
	SRR8316902	Silver flowering stage	40.659
	SRR8316904	Silver flowering stage	44.794
	SRR8316905	Silver flowering stage	26.627
	SRR8316906	Gold flowering stage	73.601
	SRR8316907	Gold flowering stage	90.986
	SRR8316908	Gold flowering stage	77.974
SRP132670	SRR6706286	Control	26.293
	SRR6706287	Light intensity 50%	33.004
	SRR6706288	Light intensity 20%	37.870
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.893
	CNS0095593	Slightly white alabastrum(diploid) 2	27.988
	CNS0095594	Slightly white alabastrum(diploid) 3	29.413
	CNS0095595	Whole white alabastrum(diploid) 2	26.343
	CNS0095596	Whole white alabastrum(diploid) 3	26.099
	CNS0095597	Whole white alabastrum(diploid) 4	22.477
	CNS0095598	Silvery flower (diploied) 1	31.300
	CNS0095599	Silvery flower (diploied) 2	31.047
	CNS0095600	Silvery flower (diploied) 3	77.076
	CNS0095601	Golden flower (diploid) 1	37.724
	CNS0095602	Golden flower (diploid) 2	68.031
	CNS0095603	Golden flower (diploid) 3	66.693
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.835
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.651
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.431
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.040
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.001
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.482
	CNS0095610	Silvery flower (tetraploid) 1	78.291
	CNS0095611	Silvery flower (tetraploid) 2	74.243
	CNS0095612	Silvery flower (tetraploid) 3	61.111
	CNS0095613	Golden flower (tetraploid) 1	76.964
	CNS0095614	Golden flower (tetraploid) 2	74.314
	CNS0095615	Golden flower (tetraploid) 3	98.874
CRA001975	CRR073297	Stem 1	43.210
	CRR073298	Stem 2	36.432
	CRR073299	Stem 3	42.754
	CRR073300	Leaf 1	45.844
	CRR073301	Leaf 2	49.477
	CRR073302	Leaf 3	53.122
	CRR073303	Juvenile bud 1	59.696
	CRR073304	Juvenile bud 2	55.022
	CRR073305	Juvenile bud 3	56.888
	CRR073306	Third green 1	39.491
	CRR073307	Third green 2	33.828
	CRR073308	Third green 3	33.779
	CRR073309	Second white 1	71.400
	CRR073310	Second white 2	55.256
	CRR073311	Second white 3	48.102
	CRR073312	Silver flowering 1	68.887
	CRR073313	Silver flowering 2	71.713
	CRR073314	Silver flowering 3	68.568
	CRR073315	Gold flowering 1	23.300
	CRR073316	Gold flowering 2	28.440
	CRR073317	Gold flowering 3	21.306
	CRR073318	Tawny withering 1	32.682
	CRR073319	Tawny withering 2	19.105
	CRR073320	Tawny withering 3	39.701