Detail information of GWHGAAZE027642


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004300739.11.45891E-45PREDICTED: transcription factor bHLH120-like [Fragaria vesca subsp. vesca]
Swissprottr|Q9STJ6|BH126_ARATH2E-31Transcription factor bHLH126
trEMBLtr|W9S6M4|W9S6M4_9ROSA5E-45Uncharacterized protein {ECO:0000313|EMBL:EXC17800.1}
TAIR10AT4G25410.11E-26basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2437265224374119-
GWHAAZE00000008mRNA2437265224374119-
GWHAAZE00000008exon2437389224374119-
GWHAAZE00000008exon2437265224373044-
GWHAAZE00000008CDS2437389224374119-
GWHAAZE00000008CDS2437265224373044-
Transcript Sequence

Network for GWHGAAZE027642

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.27HLH48961.20E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.775
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.418
SRR3591709Stem0.334
SRR3591710White floral bud1.472
SRR3591711White flower1.818
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.426
SRP173429 SRR8316895Juvenile bud stage 0.593
SRR8316896Juvenile bud stage 0.630
SRR8316897Juvenile bud stage 0.713
SRR8316894Third green stage 0.147
SRR8316900Third green stage 0.572
SRR8316901Third green stage 2.499
SRR8316898Complete white stage 3.679
SRR8316899Complete white stage 0.559
SRR8316903Complete white stage 5.353
SRR8316902Silver flowering stage4.370
SRR8316904Silver flowering stage7.122
SRR8316905Silver flowering stage3.567
SRR8316906Gold flowering stage 7.723
SRR8316907Gold flowering stage 10.520
SRR8316908Gold flowering stage 9.198
SRP132670SRR6706286Control0.112
SRR6706287Light intensity 50%0.203
SRR6706288Light intensity 20%0.096
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.171
CNS0095593Slightly white alabastrum(diploid) 20.045
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.354
CNS0095596Whole white alabastrum(diploid) 30.281
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 12.644
CNS0095599Silvery flower (diploied) 22.980
CNS0095600Silvery flower (diploied) 34.331
CNS0095601Golden flower (diploid) 10.801
CNS0095602Golden flower (diploid) 24.089
CNS0095603Golden flower (diploid) 33.987
CNS0095604Slightly white alabastrum(tetraploid) 10.197
CNS0095605Slightly white alabastrum(tetraploid) 20.387
CNS0095606Slightly white alabastrum(tetraploid) 32.575
CNS0095607Whole white alabastrum(tetraploid) 10.639
CNS0095608Whole white alabastrum(tetraploid) 20.318
CNS0095609Whole white alabastrum(tetraploid) 30.563
CNS0095610Silvery flower (tetraploid) 111.153
CNS0095611Silvery flower (tetraploid) 24.681
CNS0095612Silvery flower (tetraploid) 31.124
CNS0095613Golden flower (tetraploid) 13.594
CNS0095614Golden flower (tetraploid) 26.661
CNS0095615Golden flower (tetraploid) 30.549
CRA001975CRR073297Stem 10.075
CRR073298Stem 20.034
CRR073299Stem 30.000
CRR073300Leaf 10.172
CRR073301Leaf 20.254
CRR073302Leaf 30.132
CRR073303Juvenile bud 10.271
CRR073304Juvenile bud 20.309
CRR073305Juvenile bud 30.060
CRR073306Third green 11.292
CRR073307Third green 21.792
CRR073308Third green 31.081
CRR073309Second white 10.032
CRR073310Second white 20.729
CRR073311Second white 30.064
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.313
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.037
CRR073319Tawny withering 20.771
CRR073320Tawny withering 30.021