Detail information of GWHGAAZE027629


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006440516.10hypothetical protein CICLE_v10019427mg [Citrus clementina]
COGYP_007115389.11E-22Choline dehydrogenase
Swissprottr|Q9S746|HTH_ARATH3E-142Protein HOTHEAD (Precursor)
trEMBLtr|V4TV60|V4TV60_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR53756.1}
TAIR10AT1G12570.13E-146Glucose-methanol-choline (GMC) oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2400306324005477+
GWHAAZE00000008mRNA2400306324005477+
GWHAAZE00000008exon2400306324003525+
GWHAAZE00000008exon2400396624004357+
GWHAAZE00000008exon2400455024004943+
GWHAAZE00000008exon2400545524005477+
GWHAAZE00000008CDS2400306324003525+
GWHAAZE00000008CDS2400396624004357+
GWHAAZE00000008CDS2400455024004943+
GWHAAZE00000008CDS2400545524005477+
Transcript Sequence

Network for GWHGAAZE027629

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00732.20GMC_oxred_N192321.80E-24
PF05199.14GMC_oxred_C3293884.50E-06
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00108betA, CHDH Metabolic pathways map01100
Glycine, serine and threonine metabolismmap00260

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0050660molecular_functionflavin adenine dinucleotide binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf42.420
SRR3591706second leaf810.182
SRR3591707mature leaf90.105
SRR3591708Shoot apex234.015
SRR3591709Stem8.068
SRR3591710White floral bud27.731
SRR3591711White flower44.924
SRR3591712Green floral bud43.390
SRR3591713Yellow flower10.033
SRP173429 SRR8316895Juvenile bud stage 51.008
SRR8316896Juvenile bud stage 71.644
SRR8316897Juvenile bud stage 29.780
SRR8316894Third green stage 34.065
SRR8316900Third green stage 130.307
SRR8316901Third green stage 122.094
SRR8316898Complete white stage 5.145
SRR8316899Complete white stage 45.301
SRR8316903Complete white stage 6.100
SRR8316902Silver flowering stage4.487
SRR8316904Silver flowering stage43.839
SRR8316905Silver flowering stage1.696
SRR8316906Gold flowering stage 3.445
SRR8316907Gold flowering stage 3.020
SRR8316908Gold flowering stage 5.854
SRP132670SRR6706286Control147.056
SRR6706287Light intensity 50%164.051
SRR6706288Light intensity 20%189.263
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.331
CNS0095593Slightly white alabastrum(diploid) 228.600
CNS0095594Slightly white alabastrum(diploid) 324.234
CNS0095595Whole white alabastrum(diploid) 222.306
CNS0095596Whole white alabastrum(diploid) 317.460
CNS0095597Whole white alabastrum(diploid) 410.946
CNS0095598Silvery flower (diploied) 122.443
CNS0095599Silvery flower (diploied) 218.664
CNS0095600Silvery flower (diploied) 319.500
CNS0095601Golden flower (diploid) 114.136
CNS0095602Golden flower (diploid) 216.023
CNS0095603Golden flower (diploid) 313.985
CNS0095604Slightly white alabastrum(tetraploid) 153.065
CNS0095605Slightly white alabastrum(tetraploid) 235.073
CNS0095606Slightly white alabastrum(tetraploid) 3196.018
CNS0095607Whole white alabastrum(tetraploid) 115.551
CNS0095608Whole white alabastrum(tetraploid) 29.268
CNS0095609Whole white alabastrum(tetraploid) 3157.434
CNS0095610Silvery flower (tetraploid) 1107.128
CNS0095611Silvery flower (tetraploid) 274.632
CNS0095612Silvery flower (tetraploid) 384.654
CNS0095613Golden flower (tetraploid) 11.586
CNS0095614Golden flower (tetraploid) 260.508
CNS0095615Golden flower (tetraploid) 366.970
CRA001975CRR073297Stem 1170.617
CRR073298Stem 2201.881
CRR073299Stem 3161.065
CRR073300Leaf 1218.833
CRR073301Leaf 2271.371
CRR073302Leaf 3399.128
CRR073303Juvenile bud 179.722
CRR073304Juvenile bud 228.561
CRR073305Juvenile bud 3121.629
CRR073306Third green 127.863
CRR073307Third green 223.529
CRR073308Third green 390.347
CRR073309Second white 11.980
CRR073310Second white 28.465
CRR073311Second white 32.537
CRR073312Silver flowering 10.137
CRR073313Silver flowering 21.506
CRR073314Silver flowering 30.493
CRR073315Gold flowering 1104.100
CRR073316Gold flowering 265.897
CRR073317Gold flowering 3121.293
CRR073318Tawny withering 10.102
CRR073319Tawny withering 20.514
CRR073320Tawny withering 30.421