Gene detail

Detail information of GWHGAAZE027622

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AID51419.1	1.44772E-61	ethylene response factor 14 [Diospyros kaki]
COG	YP_004004009.1	2E-10	30S ribosomal protein S6e
Swissprot	tr\|P29345\|RS6_TOBAC	2E-51	40S ribosomal protein S6 (Fragment)
trEMBL	tr\|A0A068EN68\|A0A068EN68_DIOKA	5E-62	Ethylene response factor 14 {ECO:0000313\|EMBL:AID51419.1}
TAIR10	AT4G31700.1	2E-40	ribosomal protein S6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	23857885	23861877	+
GWHAAZE00000008	mRNA	23857885	23861877	+
GWHAAZE00000008	exon	23857885	23858291	+
GWHAAZE00000008	exon	23858489	23858570	+
GWHAAZE00000008	exon	23861110	23861877	+
GWHAAZE00000008	CDS	23857885	23858291	+
GWHAAZE00000008	CDS	23858489	23858570	+
GWHAAZE00000008	CDS	23861110	23861877	+

Transcript Sequence
>GWHTAAZE027656 ATGACCAGAAGCTTCGTGCCTTTTATGACAAGAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTTGGCGAGGAATCCAAGGGCTATATATGTAATCAAAATCATGGGAGGCTGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTGACTCCAGGCCGTGTTCATCTTCTGGTTGTGCAAGGCACTCCTTGCTTCCGAGGTTATGGAAGGCGTAACGGAGAGTGCCGAAGGAAGTCGGTCAGAGGATGCATTGTTAGCCAAGACCTCTCGGTTTTGAACTTGGTTGTCGTGAAGAAAGGTGACAATGATCTGCGTGGATTAACTGATGTTGAGAAGCCAAGGATAAGGGGTCCCAAGAGGCATCAAAGATCAGGAAGCTCTTCAATCTTACCAAAGAAGATGACGTTGAAGGAGCAGAGGGAAAAGCGCAGCGACAGCTTGGCCAAGAAGAGGTCCAGAGACTCTGCTGCATCCAAGCTGTCCATCGATGACCAATCACCTCTTCCTAATGTGCGCCATTTAGATAAAAGTCCAAATGCTACCATAACACTCACTCAATATCCTCCTCCTCCTCAACCCCTTGCTATTGTACGCCAGGGTGACCAACCCCCACTACCTAATGTGCGCCAGGGAGACCGATCGCCACGCAGTATACCAACCGCCACGAGTCAAAACACATCACCCAAAACCACCACAAGCGCCACCACCTCGAGGGGATCACCGCCGCCTCCGTCCACCGGAAAACACCCCACCTACCGTGGCATACGCAGCCGGAGCGGCAAGTGGGTGTCAGAAATCCGCGAACCACGCAAAACGACACGCATATGGCTCGGGACCTTCCCGACACCCGAGATGGCGGCCGCTGCTTATGACGTGGCGGCACTGGCACTCAGAGGCGGCGGTACCGCCCTTAACTTCCCGGAACACGCGCACGCGTATCCCGTGCCCGATACGCCTTCGCCCAAGGCCATACAAAGAGCATCAGCAGCAGCAGCGGCTATGATGAAGGTGCAAGTAGGGAATCAAAACCCACACGTAATGGGGCAATCGGGAACTAATACAGCCAGCGAATACAATTATGATCATGGTGGTACTGGTGATGAGTTTATAGATGACGAAGCAATTTTCGGGATGCCAAATTTACTGGTGGACATGGCGGAGGGAATGCTAGTGAGCCCACCAAGGTTGAACTCCTCGCCGTCTGATGACTTGCCGGAGAATTCCGAGGGGGAGAGTCTTTGGGGTTATTTTTGA

Network for GWHGAAZE027622

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01092.20	Ribosomal_S6e	30	110	2.80E-30
PF00847.21	AP2	252	300	1.50E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003735	molecular_function	structural constituent of ribosome
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.550
	SRR3591706	second leaf	0.216
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.363
	SRR3591709	Stem	7.279
	SRR3591710	White floral bud	0.922
	SRR3591711	White flower	0.501
	SRR3591712	Green floral bud	0.330
	SRR3591713	Yellow flower	0.036
SRP173429	SRR8316895	Juvenile bud stage	3.102
	SRR8316896	Juvenile bud stage	1.904
	SRR8316897	Juvenile bud stage	3.708
	SRR8316894	Third green stage	0.193
	SRR8316900	Third green stage	0.704
	SRR8316901	Third green stage	2.541
	SRR8316898	Complete white stage	0.013
	SRR8316899	Complete white stage	5.693
	SRR8316903	Complete white stage	0.192
	SRR8316902	Silver flowering stage	0.460
	SRR8316904	Silver flowering stage	0.487
	SRR8316905	Silver flowering stage	0.220
	SRR8316906	Gold flowering stage	0.236
	SRR8316907	Gold flowering stage	0.257
	SRR8316908	Gold flowering stage	0.328
SRP132670	SRR6706286	Control	0.085
	SRR6706287	Light intensity 50%	0.138
	SRR6706288	Light intensity 20%	0.131
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.549
	CNS0095593	Slightly white alabastrum(diploid) 2	1.022
	CNS0095594	Slightly white alabastrum(diploid) 3	1.724
	CNS0095595	Whole white alabastrum(diploid) 2	1.773
	CNS0095596	Whole white alabastrum(diploid) 3	0.063
	CNS0095597	Whole white alabastrum(diploid) 4	0.689
	CNS0095598	Silvery flower (diploied) 1	6.466
	CNS0095599	Silvery flower (diploied) 2	4.052
	CNS0095600	Silvery flower (diploied) 3	2.886
	CNS0095601	Golden flower (diploid) 1	1.833
	CNS0095602	Golden flower (diploid) 2	5.449
	CNS0095603	Golden flower (diploid) 3	4.318
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.028
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.247
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.149
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.162
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.078
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.129
	CNS0095610	Silvery flower (tetraploid) 1	0.241
	CNS0095611	Silvery flower (tetraploid) 2	0.148
	CNS0095612	Silvery flower (tetraploid) 3	0.372
	CNS0095613	Golden flower (tetraploid) 1	0.033
	CNS0095614	Golden flower (tetraploid) 2	0.039
	CNS0095615	Golden flower (tetraploid) 3	0.055
CRA001975	CRR073297	Stem 1	1.036
	CRR073298	Stem 2	1.302
	CRR073299	Stem 3	0.633
	CRR073300	Leaf 1	1.342
	CRR073301	Leaf 2	1.551
	CRR073302	Leaf 3	1.991
	CRR073303	Juvenile bud 1	0.486
	CRR073304	Juvenile bud 2	0.653
	CRR073305	Juvenile bud 3	2.916
	CRR073306	Third green 1	0.327
	CRR073307	Third green 2	0.223
	CRR073308	Third green 3	0.723
	CRR073309	Second white 1	0.351
	CRR073310	Second white 2	0.458
	CRR073311	Second white 3	0.090
	CRR073312	Silver flowering 1	0.517
	CRR073313	Silver flowering 2	1.036
	CRR073314	Silver flowering 3	0.015
	CRR073315	Gold flowering 1	0.624
	CRR073316	Gold flowering 2	6.130
	CRR073317	Gold flowering 3	4.866
	CRR073318	Tawny withering 1	2.044
	CRR073319	Tawny withering 2	16.125
	CRR073320	Tawny withering 3	3.293