Gene detail

Detail information of GWHGAAZE027615

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010661082.1	0	PREDICTED: probable NOT transcription complex subunit VIP2 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q52JK6\|VIP2_NICBE	2E-164	Probable NOT transcription complex subunit VIP2 (Fragment)
trEMBL	tr\|D7TW46\|D7TW46_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34721.3}
TAIR10	AT1G07705.2	6E-137	NOT2 / NOT3 / NOT5 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	23757702	23766219	+
GWHAAZE00000008	mRNA	23757702	23766219	+
GWHAAZE00000008	exon	23757702	23757816	+
GWHAAZE00000008	exon	23757941	23758119	+
GWHAAZE00000008	exon	23758523	23758571	+
GWHAAZE00000008	exon	23758673	23758819	+
GWHAAZE00000008	exon	23759809	23759878	+
GWHAAZE00000008	exon	23760173	23760390	+
GWHAAZE00000008	exon	23760490	23760582	+
GWHAAZE00000008	exon	23762373	23762461	+
GWHAAZE00000008	exon	23762838	23762981	+
GWHAAZE00000008	exon	23764212	23764681	+
GWHAAZE00000008	exon	23765125	23765166	+
GWHAAZE00000008	exon	23765776	23765990	+
GWHAAZE00000008	exon	23766170	23766219	+
GWHAAZE00000008	CDS	23757702	23757816	+
GWHAAZE00000008	CDS	23757941	23758119	+
GWHAAZE00000008	CDS	23758523	23758571	+
GWHAAZE00000008	CDS	23758673	23758819	+
GWHAAZE00000008	CDS	23759809	23759878	+
GWHAAZE00000008	CDS	23760173	23760390	+
GWHAAZE00000008	CDS	23760490	23760582	+
GWHAAZE00000008	CDS	23762373	23762461	+
GWHAAZE00000008	CDS	23762838	23762981	+
GWHAAZE00000008	CDS	23764212	23764681	+
GWHAAZE00000008	CDS	23765125	23765166	+
GWHAAZE00000008	CDS	23765776	23765990	+
GWHAAZE00000008	CDS	23766170	23766219	+

Transcript Sequence
>GWHTAAZE027649 TCAGGTTCAAATGGCTCAACATCAAATCTTGCGGACACCAATGGAAGAGCTTTTGCTTCCTTTTCTGCTCAATCAGGATCCAGTGCTGCTGATATGAATCATTCCGACGGGATAGGATCTGGACTAGGACTACACAACATTCATGGGAATTTCAACATGTCCAACATGCCGGGTACATTTGCATCGAGAAATTCCACGTTGAACGGTGGTCCTCCAAGCAGTATCCAACAATCTGCAGGAAGCATGTCTAATGGGCGATTCGCAATAAATAATCTTCCTGGTACACTTTCTCAGCCATCTCCTGCCAGCTCACATGGATACTCAGGGATTACTAATAATGGAGGATCAGGTGTATCACCAAGTTTAGGCAATACAGGACGAATTATGAACTCAATGGGTAACCTTGTGAATGTGGGGAATATTGGAAGGAGTTTAAGTTCAGGTGGAGGATTAAATATGCCCGGTGTTGCTTCTCGCTTAAATTTAACAGGTTTCTTTTGTGTCTATTCTCTTTTATCACTTTGTTTCCCATTTGCCTTGTTTTCGGTTCCACATAGCAGAACTTCAGCACCGCAGATGGCATCTCTGCTAGGAAATTCCTATTCTGCTTCTGGAGGGCTGCTCTCACAAAACCAATTCCAAGGTGGGAATAATCATCTAGCATCAATGGCATTGCTAAATGAAATGAATGCCCGTGAGCATTCTACTTTTGATATAAACGATTTCCCTCAGCTGACTGGGCATTTTAATTCTGCTGGTGGGTCTCAGGGACAATTAGGTTTGACACGGAAACAAAATGTAGGTTTCTTACAACAAAACCAAGAGTTCAGTATTCAAAATGAAGATTTTCCTGCTTTACCTGGATATAAAGGTGGTAATTCCGAGTTTCCAGTCAATATGCACCAGAAAGAACAGCTACATGAAAATGTTGTATCTATGATGCAATCACAGCACTTGCCTGTTGGAAGATCAGCTGGATTCAGCTTGGGTGGTGCATACTCATCACATCATCAGCAGCCGCAGCAGCATGCTCCATCAGTAAATGGTGGCGGGCACTCCTTTTTACCTGCAAACAATCAGGATCTCCATTTTCATGGTTCTGAGGGCCGAAGCTCAGGGCTACCTTCCAGTGGATCAAGGCCTATAAACCTACCAAATGCAGTGTCGGGTGCGGGATCATACGATCAACTTATGCAGCAGTATCAACAATTCCAAAAACAGTCACAGTTTCGCTTGGTGGGTTCATTTAGAGATCAAGACTCGAAGTCAACACAAGCATTACAAACCTCTACCGATAGATTTGGATTGCTTGGTTTGTTAAGTGTAATAAGAATGAGTAATCCTGATTTGACCTCCCTTGCTCTGGGAATTGATCTGATGACGCTTGGTCTAAATTTGAACTCCTCAGAAAATCTTCACAAAAAATTCGCCTCTCCGTGGTCTGATGAATCTGCCAAGGGAGAGCCTAATTACAGCATCCCAGAGTGTTTTAATTCTAAACAACCACCTGCACTAAATGTTAGCTCTTCTTGGTTTTTCTATTATTTGGTTATGCTAAGAAGTCCTTGTGCCTTCATGCCAAAGGAGGAGGCGCAGTTGTATGCGGCAAATGAACTGCATACTAGGGGGTGGTTTTTCCATAGAGAGCTCCGCTTGTGGTTCATAAGGGTCCCCAACATGGAACCTCTTGTTAAGACGACAAACTACGAGAGAGGTTGCTACTTTTGTTTTGATCCTAACACATGGGAGACAAATCGAAAGGTTCGCATTATTAAACTTCATCACTTTACATTCACAACTCATTTTCTTAATCAAACCTTAATCTCTTCAAAGAGGGGAAGAGAAGTGTGGGAGGAGAAAACTGGCTTTGATGGTGATTAG

Network for GWHGAAZE027615

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04153.19	NOT2_3_5	476	587	6.30E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12605	CNOT2, NOT2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.512
	SRR3591706	second leaf	10.687
	SRR3591707	mature leaf	11.524
	SRR3591708	Shoot apex	16.391
	SRR3591709	Stem	35.309
	SRR3591710	White floral bud	29.053
	SRR3591711	White flower	27.649
	SRR3591712	Green floral bud	30.061
	SRR3591713	Yellow flower	20.790
SRP173429	SRR8316895	Juvenile bud stage	15.018
	SRR8316896	Juvenile bud stage	21.892
	SRR8316897	Juvenile bud stage	10.561
	SRR8316894	Third green stage	9.768
	SRR8316900	Third green stage	28.239
	SRR8316901	Third green stage	25.856
	SRR8316898	Complete white stage	14.418
	SRR8316899	Complete white stage	33.506
	SRR8316903	Complete white stage	26.696
	SRR8316902	Silver flowering stage	11.701
	SRR8316904	Silver flowering stage	15.361
	SRR8316905	Silver flowering stage	6.579
	SRR8316906	Gold flowering stage	19.940
	SRR8316907	Gold flowering stage	22.616
	SRR8316908	Gold flowering stage	21.518
SRP132670	SRR6706286	Control	20.495
	SRR6706287	Light intensity 50%	23.707
	SRR6706288	Light intensity 20%	25.766
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.622
	CNS0095593	Slightly white alabastrum(diploid) 2	12.006
	CNS0095594	Slightly white alabastrum(diploid) 3	10.657
	CNS0095595	Whole white alabastrum(diploid) 2	9.974
	CNS0095596	Whole white alabastrum(diploid) 3	9.730
	CNS0095597	Whole white alabastrum(diploid) 4	10.569
	CNS0095598	Silvery flower (diploied) 1	15.106
	CNS0095599	Silvery flower (diploied) 2	11.370
	CNS0095600	Silvery flower (diploied) 3	25.307
	CNS0095601	Golden flower (diploid) 1	10.754
	CNS0095602	Golden flower (diploid) 2	20.992
	CNS0095603	Golden flower (diploid) 3	20.706
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.742
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.590
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.011
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.607
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.634
	CNS0095610	Silvery flower (tetraploid) 1	24.400
	CNS0095611	Silvery flower (tetraploid) 2	25.978
	CNS0095612	Silvery flower (tetraploid) 3	28.168
	CNS0095613	Golden flower (tetraploid) 1	12.167
	CNS0095614	Golden flower (tetraploid) 2	20.594
	CNS0095615	Golden flower (tetraploid) 3	20.152
CRA001975	CRR073297	Stem 1	19.093
	CRR073298	Stem 2	18.413
	CRR073299	Stem 3	12.717
	CRR073300	Leaf 1	21.425
	CRR073301	Leaf 2	20.299
	CRR073302	Leaf 3	12.697
	CRR073303	Juvenile bud 1	13.874
	CRR073304	Juvenile bud 2	14.585
	CRR073305	Juvenile bud 3	20.385
	CRR073306	Third green 1	10.544
	CRR073307	Third green 2	10.289
	CRR073308	Third green 3	10.141
	CRR073309	Second white 1	8.456
	CRR073310	Second white 2	9.169
	CRR073311	Second white 3	8.578
	CRR073312	Silver flowering 1	5.071
	CRR073313	Silver flowering 2	6.633
	CRR073314	Silver flowering 3	6.406
	CRR073315	Gold flowering 1	5.484
	CRR073316	Gold flowering 2	8.075
	CRR073317	Gold flowering 3	5.035
	CRR073318	Tawny withering 1	12.995
	CRR073319	Tawny withering 2	8.034
	CRR073320	Tawny withering 3	14.480