Gene detail

Detail information of GWHGAAZE027605

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267820.2	1.3867E-152	PREDICTED: uncharacterized protein LOC100243097 [Vitis vinifera]
COG	NP_923239.1	3E-39	carbonyl reductase
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	1E-66	(+)-neomenthol dehydrogenase
trEMBL	tr\|A0A061DTA4\|A0A061DTA4_THECC	1E-141	NAD(P)-binding Rossmann-fold superfamily protein {ECO:0000313\|EMBL:EOX96034.1}
TAIR10	AT3G61220.1	2E-57	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	23478056	23493310	-
GWHAAZE00000008	mRNA	23478056	23493310	-
GWHAAZE00000008	exon	23493297	23493310	-
GWHAAZE00000008	exon	23491703	23491949	-
GWHAAZE00000008	exon	23491323	23491397	-
GWHAAZE00000008	exon	23489737	23490103	-
GWHAAZE00000008	exon	23488302	23488374	-
GWHAAZE00000008	exon	23485671	23485914	-
GWHAAZE00000008	exon	23484614	23484688	-
GWHAAZE00000008	exon	23478056	23478433	-
GWHAAZE00000008	CDS	23493297	23493310	-
GWHAAZE00000008	CDS	23491703	23491949	-
GWHAAZE00000008	CDS	23491323	23491397	-
GWHAAZE00000008	CDS	23489737	23490103	-
GWHAAZE00000008	CDS	23488302	23488374	-
GWHAAZE00000008	CDS	23485671	23485914	-
GWHAAZE00000008	CDS	23484614	23484688	-
GWHAAZE00000008	CDS	23478056	23478433	-

Transcript Sequence
>GWHTAAZE027639 ATGGCTACCAAGAGGATTGCAGTAGTAACCGGAGCTAATAAAGGGATCGGGCTAGAGATATGCAAGCAGTTAGCTTCGAATGGAGTGATGGTGGTATTAACTTCTAGAGATGAAAAAAGAGGGATTGAAGCTTTTGATGGGCTTAATTCAAATGGGCTTTCTGAGAATGTGATTTTCCATCAGCTAGATGTGACGGACACTGCTAGTGTTGCTTCCTTGGCCAATTTCATCCAAATTCATTTTGGAAAACTTGACATTTTGGTGAACAATGCGGCCGTTTCCGGAGTTGATCTCGACCCAGAACTTCGAAAAGGATTCAAAACCGGCAATGATGAACGCATTGCAAATGAAAAGGCCAAGGAGCTAGGAGATGTGGAAACGCTAACAGAAGAGAAAGTGGATGAGATTGTGAAGGGATTTCTAGAGGATGTGAAGGCAAATTCAGTTGAAACCAAAGGATGGCCCACTTTTTACCCTGCGTATACTGTTTCAAAAGCAGCTTTAAATGCCTACACAAGGATTTTAGCAAAGAAATTGTACCCAAAAATTGCAATAAATGCAGTTAGTCCAGGGCATGTAAAAACTGACCTTAACTATCAGAGAGGGGTTTTAAGCGTTGAAGAAGGTGCAAAAGGCCCTGTTAGGCTGGCTTTGATGACTGACGAAGGCAAAACTGGCTTGTTTTTTGACCAAATGGAAGAGTGCGCTAGAGGAACCATCGGGCAACAAAGCCGCCATTACAGGAGCTCTGGCACCTTCCTCAAGGGTCAAGTGAAGTGTGCAGTTGTAACTGGAGGGAACAAAGGAATTGGGCTTGAGATTTGTAGGCAGTTAGCATCAAATGGAATAAGAGTAATATTAACTACTAGAGATGAGAAAAGGGGTATTACAGCTGTTGAAGAACTTAAAGCCGGTGGACTCTTTGATGTTCTTTTTCATCAACTAGACGTTAAAGATTCTTCAAGCATTGCTTCATTTGCAAAATTTATTGGACCGAACTTCAACAAACTTGATATTCTGGTGAATAATGCCGCGGAAGGTGGAACTATTATAAATGCTGCAGCACTTAGGGCTTTTAAAAATGGAGCTGGATTTCATATCAGCAATGAAAAGGTTAAAGCAGAGCTACAAAATATTGACAACTTGACAGAAGAAAAAATAGATGAAATTTTGCAATGGTTCTTAAGGGATTTCAAGGAAGACAAACTGAAGGCAAATGGTTGGCCTATTACTGTATCTGCTTATAAAGTTTCAAAAGCTTTTATAAATGCATATACAAGACTCTTAGTGAAGAAATTCCCAAATATGCTTGTCAATTGTGTACATCCCGGGTACGTTAGAACATATATCACACGCAACAGTGGGTACATGACCACAGAGGATGGTGCTAAAGCTCCAGTAATGTTGGCGTTGTTTCCTGATGATGGTCCTTCTGGCGTCTACTTTAATCAAATGAATGTATCCAATTTTTAA

Network for GWHGAAZE027605

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	6	199	2.70E-29
PF00106.26	adh_short	259	346	2.60E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15095	E1.1.1.208	Biosynthesis of secondary metabolites	map01110
K15095	E1.1.1.208	Monoterpenoid biosynthesis	map00902

Gene Ontology

GO term	Ontology	Name
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.018
	SRR3591706	second leaf	0.141
	SRR3591707	mature leaf	0.008
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.515
	SRR3591710	White floral bud	0.045
	SRR3591711	White flower	0.062
	SRR3591712	Green floral bud	0.037
	SRR3591713	Yellow flower	0.292
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.017
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.013
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.061
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.106
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.082
	SRR8316906	Gold flowering stage	0.181
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.053
SRP132670	SRR6706286	Control	0.011
	SRR6706287	Light intensity 50%	0.002
	SRR6706288	Light intensity 20%	0.032
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.003
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.031
	CNS0095595	Whole white alabastrum(diploid) 2	0.011
	CNS0095596	Whole white alabastrum(diploid) 3	0.023
	CNS0095597	Whole white alabastrum(diploid) 4	0.024
	CNS0095598	Silvery flower (diploied) 1	0.231
	CNS0095599	Silvery flower (diploied) 2	0.021
	CNS0095600	Silvery flower (diploied) 3	0.005
	CNS0095601	Golden flower (diploid) 1	0.152
	CNS0095602	Golden flower (diploid) 2	0.053
	CNS0095603	Golden flower (diploid) 3	0.022
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.006
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.019
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.049
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.006
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.006
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.030
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.032
	CNS0095613	Golden flower (tetraploid) 1	0.247
	CNS0095614	Golden flower (tetraploid) 2	0.024
	CNS0095615	Golden flower (tetraploid) 3	0.001
CRA001975	CRR073297	Stem 1	0.014
	CRR073298	Stem 2	0.005
	CRR073299	Stem 3	0.011
	CRR073300	Leaf 1	0.029
	CRR073301	Leaf 2	0.024
	CRR073302	Leaf 3	0.013
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.056
	CRR073316	Gold flowering 2	0.041
	CRR073317	Gold flowering 3	0.031
	CRR073318	Tawny withering 1	0.064
	CRR073319	Tawny withering 2	0.181
	CRR073320	Tawny withering 3	0.116