Gene detail

Detail information of GWHGAAZE027544

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002509834.1	3.82414E-68	Arginine/serine-rich-splicing factor, putative [Ricinus communis]
COG	YP_003797161.1	7E-13	RNA-binding protein
Swissprot	tr\|Q84TH4\|SR45A_ARATH	1E-34	Serine/arginine-rich splicing factor SR45a
trEMBL	tr\|B9RCF0\|B9RCF0_RICCO	1E-68	Arginine/serine-rich-splicing factor, putative {ECO:0000313\|EMBL:EEF51221.1}
TAIR10	AT4G35785.2	1E-35	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	21874335	21877693	+
GWHAAZE00000008	mRNA	21874335	21877693	+
GWHAAZE00000008	exon	21874335	21874449	+
GWHAAZE00000008	exon	21874881	21874992	+
GWHAAZE00000008	exon	21875822	21875971	+
GWHAAZE00000008	exon	21876515	21876578	+
GWHAAZE00000008	exon	21877288	21877693	+
GWHAAZE00000008	five_prime_UTR	21874335	21874345	+
GWHAAZE00000008	CDS	21874346	21874449	+
GWHAAZE00000008	CDS	21874881	21874992	+
GWHAAZE00000008	CDS	21875822	21875971	+
GWHAAZE00000008	CDS	21876515	21876578	+
GWHAAZE00000008	CDS	21877288	21877436	+
GWHAAZE00000008	three_prime_UTR	21877437	21877693	+

Transcript Sequence
>GWHTAAZE027578 AAGAATTATGAATGTTCTCTTGCAATCCTAGATCTGCTTCACCACCGAACTCTGCATCACCTGGTAGGGTTCATCGGCCAAGATCATTATCGAGGTCTAGGAGGAGTCGCTCGAGGAGCCGTGATTCTGATGATGTTGAGAATCCTGGAAATAATCTTTATGTTACGGGCTTATCAACACGAGTTACAAGCAGTGATCTTGAGAAGTATTTTAACAAGGAAGGAAAGGTTACTGATTGCCATCTGGTTACAGATCCTCGCTCTAAAGAATCCCGTGGATTTGCTTTTGTTACAATGGCAACCAATGAGGATGCAGAGCGCTGTGTCAAGTATCTAAACCGTTCTGTGCTGGAAGGACGATTAATTACTGTGGAAAAGGCGAAGAGGAAGCGTGGAAGGACACCAACTCCTGGAAGGTATCATGGTGTAAATGATAAACGAGGAAATGGTCGGAGACGGTCCCGTAGCCACTCACCTCGCCGGCGTAATGACAGAAGAGATTTTCAGCCAAGGGATCGTCGAGGAAGATCACGTTCACCCTATGGTCGAAGGACCGATGATTATTCTAGTTCGTATAGGAGACGCCCGTAGCAATTTCTTGCCAATTTGGTTTGGGAAGAATTGGATGAACATTTGTTAATTTGTATCAAAAATGTACTACTTATTGAATGGTTCTCTCTCTCTCTCTCAAAATGGTGTCTTCCAAGATAATGGCAGTGATCACGATCTCAGCCCAATTCATTTGTGTTATTCTTGATTGGTGTTGTATGGATCTATTGAAGGCATGATAGTTACTTGGTTCTTTAATTCACTCCCTTTTTGATAAATAATTGATATTCCAAATATTG

Network for GWHGAAZE027544

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	49	118	1.40E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12897	TRA2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.818
	SRR3591706	second leaf	25.073
	SRR3591707	mature leaf	26.515
	SRR3591708	Shoot apex	40.721
	SRR3591709	Stem	43.832
	SRR3591710	White floral bud	46.042
	SRR3591711	White flower	41.250
	SRR3591712	Green floral bud	35.166
	SRR3591713	Yellow flower	64.736
SRP173429	SRR8316895	Juvenile bud stage	32.030
	SRR8316896	Juvenile bud stage	43.607
	SRR8316897	Juvenile bud stage	19.255
	SRR8316894	Third green stage	19.923
	SRR8316900	Third green stage	41.937
	SRR8316901	Third green stage	47.417
	SRR8316898	Complete white stage	23.855
	SRR8316899	Complete white stage	57.710
	SRR8316903	Complete white stage	36.986
	SRR8316902	Silver flowering stage	20.808
	SRR8316904	Silver flowering stage	22.612
	SRR8316905	Silver flowering stage	12.560
	SRR8316906	Gold flowering stage	36.568
	SRR8316907	Gold flowering stage	42.182
	SRR8316908	Gold flowering stage	35.162
SRP132670	SRR6706286	Control	42.337
	SRR6706287	Light intensity 50%	45.148
	SRR6706288	Light intensity 20%	45.179
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.896
	CNS0095593	Slightly white alabastrum(diploid) 2	49.728
	CNS0095594	Slightly white alabastrum(diploid) 3	37.049
	CNS0095595	Whole white alabastrum(diploid) 2	41.708
	CNS0095596	Whole white alabastrum(diploid) 3	38.623
	CNS0095597	Whole white alabastrum(diploid) 4	42.191
	CNS0095598	Silvery flower (diploied) 1	72.025
	CNS0095599	Silvery flower (diploied) 2	46.941
	CNS0095600	Silvery flower (diploied) 3	37.694
	CNS0095601	Golden flower (diploid) 1	64.864
	CNS0095602	Golden flower (diploid) 2	44.372
	CNS0095603	Golden flower (diploid) 3	48.107
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.338
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.323
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.016
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.347
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.957
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.845
	CNS0095610	Silvery flower (tetraploid) 1	39.915
	CNS0095611	Silvery flower (tetraploid) 2	38.951
	CNS0095612	Silvery flower (tetraploid) 3	30.945
	CNS0095613	Golden flower (tetraploid) 1	48.426
	CNS0095614	Golden flower (tetraploid) 2	44.671
	CNS0095615	Golden flower (tetraploid) 3	42.881
CRA001975	CRR073297	Stem 1	44.427
	CRR073298	Stem 2	38.548
	CRR073299	Stem 3	32.818
	CRR073300	Leaf 1	46.208
	CRR073301	Leaf 2	47.041
	CRR073302	Leaf 3	35.163
	CRR073303	Juvenile bud 1	37.140
	CRR073304	Juvenile bud 2	19.782
	CRR073305	Juvenile bud 3	32.091
	CRR073306	Third green 1	10.290
	CRR073307	Third green 2	11.165
	CRR073308	Third green 3	11.949
	CRR073309	Second white 1	12.144
	CRR073310	Second white 2	17.116
	CRR073311	Second white 3	12.389
	CRR073312	Silver flowering 1	8.012
	CRR073313	Silver flowering 2	5.212
	CRR073314	Silver flowering 3	5.271
	CRR073315	Gold flowering 1	12.859
	CRR073316	Gold flowering 2	14.942
	CRR073317	Gold flowering 3	9.551
	CRR073318	Tawny withering 1	32.916
	CRR073319	Tawny withering 2	35.198
	CRR073320	Tawny withering 3	33.165