Gene detail

Detail information of GWHGAAZE027510

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007040424.1	0	Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
COG	YP_004163700.1	1E-16	hypothetical protein
Swissprot	tr\|Q9SUQ3\|Y4374_ARATH	0	Probable inactive receptor kinase At4g23740 (Precursor)
trEMBL	tr\|A0A061G6V8\|A0A061G6V8_THECC	0	Leucine-rich repeat protein kinase family protein isoform 1 {ECO:0000313\|EMBL:EOY24927.1}
TAIR10	AT4G23740.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	21227728	21231218	-
GWHAAZE00000008	mRNA	21227728	21231218	-
GWHAAZE00000008	exon	21227728	21228392	-
GWHAAZE00000008	exon	21229994	21231218	-
GWHAAZE00000008	CDS	21229994	21231218	-
GWHAAZE00000008	CDS	21227728	21228392	-

Transcript Sequence
>GWHTAAZE027544 ATGGAGGTTTTGGGTTTGTACATTTTCTTGGTGGGTCTGTTTGTTTCTCGAGTAAATGGTGGGGTTCTTGTTGATGGGGAAAAGCAAGCATTGCTTGAATTTATGAACAATCTTCCTCACTCTAGGTCTTTGAACTGGGATGAGTACTCACCAGTGTGTAATCACTGGACTGGAATCACTTGTAGTGATGATGGGTCTCGAGTAATCGCCGTCCGATTGCCCGGAGTTGGGTTTCACGGCCACATTCCGGCGAATACTCTGAGCAGGCTCTCAGCATTGCAGATCTTGAGCCTCAGATCTAATGGTATCACTGGAACTTTCCCTTCTGATTTTGTTAATTTGAGGAACTTGACTTGTCTTTATCTTCAGTTCAATAATTTTGAGGGGAATTTGCCTCTTGATTTCTCTGTTTGGAAGAATCTAACTATTGTTAATTTGTCGAACAATGCGTTTAATGGAAGTATACCTGATTCATTTTCGAATTTGACCCATTTATCAGCTTTGAATCTTGCTAACAATTCGCTTTCTGGGGAGATTCCGGATTGGAATTTGCCTAGTTTGCAGTTGTTGAATTTATCAAACAATAATAATATCACAGGGTTTGTGCCTAAATCGCTTCAAAAGTTTCCGCATTCGGTGTTTACTAACACCAATGTTTCTTTTCCATACTCTCCGAGTCCTGGATTTGTGCCCTCTATTGATTCAAACCCAAAATCCAAGAATGGTGGAAAATTAAGTGAGAGGGCGCTTCTTGGAATCATACTTGCCGGTTGTGTTCTTGGGCTTTTTGGGTTTGCTTTTCTCTTGCTTGTTTGCTGTTTGAAGAGAAAAAGTGTGGATTTTCCGGGAAAATTGGAGAAGGGGGAAATGTCGCCGGAAAAAGCGATTTCGAGGAATCAAGATGCGAATAACAGATTGGTTTTCTTTGAGGGTTGTAGCTATGCATTTGATTTGGAGGATTTGTTGAGGGCTTCGGCTGAAGTTCTTGGTAAGGGCACGTTTGGCATGTCGTATAAGGCTATATTAGAGGATGGTACTTCTGTGGTGGTGAAGAGGTTGAAGGAGGTTGGTGTTGGAAAGAAGGATTTTGAGCAGCAATTGGAGGTGGTGGGGAGCATTAAGCACCCAAATGTGATTGAGCTTAGGGCCTATTATTACTCAAAGGATGAGAAGCTTATCGTATATGATTATTACAGCCAGGGGAGTGTTTCTTCAATGCTACATGGCAAAAGAGGAGAAGAGAGGACTCCTTTAAGTTGGGAAACTCGAGTGAAAATAGCCGTAGGTGCAGCCCGAGGCATTGCTCGAATCCACTTAGAAAACGGCGGTAAACTTGTTCACGGCAACATTAAATCCTCAAATATATTCTTAAACCCCCAAAACGACGGCTGTGTATCGGACGTCGCGCTGTCAACGATAATGAGCCAGCTGGCCCCACCTATAGCGCGTGCGGCCGGCTACCGTGCACCAGAGGTGACTGACACACGCAAGGCCTCACAACCATCAGATGTCTACAGCTTTGGCGTGCTGTTGCTCGAACTCCTCACAGGTAAGTCGCCGGTCCATGCCACTGGTGGTGAAGAGGTGGTGCACTTGGTCCGGTGGGTGCACTCAGTGGTCCGGGAGGAGTGGACCGCTGAGGTTTTCGATTTGGAGCTCATGAGGTACCCAAATATCGAGGAAGAGTTGGTGGAGGTGTTGCAAATAGCTATGGCTTGTGTCGTTAGGGTACCGGACCAAAGGCCAAGAATGGTAGAAGTGGTGAAGATGATTGAAAATGTCCGGCAGCCTCCGCTGGAGGCCAAGTCAGAAAGTTCAACGCCGCAACTGCCGCCAGTGGTGCCGCCACCGGCAGCAGTTGTTGAGAAAGAATCACCAGTCTCACAATGA

Network for GWHGAAZE027510

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	62	1.30E-06
PF13855.7	LRR_8	81	127	2.30E-06
PF00560.34	LRR_1	140	162	1.2
PF00560.34	LRR_1	186	209	0.63
PF00069.26	Pkinase	326	589	1.20E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.683
	SRR3591706	second leaf	22.026
	SRR3591707	mature leaf	2.019
	SRR3591708	Shoot apex	43.073
	SRR3591709	Stem	16.593
	SRR3591710	White floral bud	64.914
	SRR3591711	White flower	51.032
	SRR3591712	Green floral bud	15.299
	SRR3591713	Yellow flower	13.093
SRP173429	SRR8316895	Juvenile bud stage	11.357
	SRR8316896	Juvenile bud stage	14.103
	SRR8316897	Juvenile bud stage	7.789
	SRR8316894	Third green stage	5.693
	SRR8316900	Third green stage	10.650
	SRR8316901	Third green stage	11.399
	SRR8316898	Complete white stage	25.665
	SRR8316899	Complete white stage	16.265
	SRR8316903	Complete white stage	40.139
	SRR8316902	Silver flowering stage	18.164
	SRR8316904	Silver flowering stage	35.004
	SRR8316905	Silver flowering stage	21.001
	SRR8316906	Gold flowering stage	26.980
	SRR8316907	Gold flowering stage	22.502
	SRR8316908	Gold flowering stage	41.788
SRP132670	SRR6706286	Control	10.881
	SRR6706287	Light intensity 50%	12.267
	SRR6706288	Light intensity 20%	9.436
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.649
	CNS0095593	Slightly white alabastrum(diploid) 2	18.182
	CNS0095594	Slightly white alabastrum(diploid) 3	10.208
	CNS0095595	Whole white alabastrum(diploid) 2	12.822
	CNS0095596	Whole white alabastrum(diploid) 3	10.347
	CNS0095597	Whole white alabastrum(diploid) 4	9.243
	CNS0095598	Silvery flower (diploied) 1	31.728
	CNS0095599	Silvery flower (diploied) 2	36.241
	CNS0095600	Silvery flower (diploied) 3	43.810
	CNS0095601	Golden flower (diploid) 1	22.392
	CNS0095602	Golden flower (diploid) 2	21.245
	CNS0095603	Golden flower (diploid) 3	21.933
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.752
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.372
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.666
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.539
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.437
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.593
	CNS0095610	Silvery flower (tetraploid) 1	25.474
	CNS0095611	Silvery flower (tetraploid) 2	26.725
	CNS0095612	Silvery flower (tetraploid) 3	91.489
	CNS0095613	Golden flower (tetraploid) 1	6.167
	CNS0095614	Golden flower (tetraploid) 2	15.879
	CNS0095615	Golden flower (tetraploid) 3	13.706
CRA001975	CRR073297	Stem 1	25.627
	CRR073298	Stem 2	26.392
	CRR073299	Stem 3	29.126
	CRR073300	Leaf 1	21.775
	CRR073301	Leaf 2	20.006
	CRR073302	Leaf 3	15.848
	CRR073303	Juvenile bud 1	17.474
	CRR073304	Juvenile bud 2	35.978
	CRR073305	Juvenile bud 3	23.119
	CRR073306	Third green 1	120.850
	CRR073307	Third green 2	117.121
	CRR073308	Third green 3	119.900
	CRR073309	Second white 1	55.736
	CRR073310	Second white 2	39.363
	CRR073311	Second white 3	20.711
	CRR073312	Silver flowering 1	7.280
	CRR073313	Silver flowering 2	10.212
	CRR073314	Silver flowering 3	9.631
	CRR073315	Gold flowering 1	2.498
	CRR073316	Gold flowering 2	2.754
	CRR073317	Gold flowering 3	3.105
	CRR073318	Tawny withering 1	9.543
	CRR073319	Tawny withering 2	8.004
	CRR073320	Tawny withering 3	12.228