Detail information of GWHGAAZE027509


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001235332.18.4201E-106uncharacterized protein LOC100305945 [Glycine max]
COGYP_008797956.18E-25ubiquitin-conjugating enzyme E2-like protein
Swissprottr|P35135|UBC4_SOLLC3E-106Ubiquitin-conjugating enzyme E2-17 kDa
trEMBLtr|V7BMU6|V7BMU6_PHAVU3E-106Uncharacterized protein {ECO:0000313|EMBL:ESW19267.1}
TAIR10AT1G64230.26E-83ubiquitin-conjugating enzyme 28

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2118819021192612-
GWHAAZE00000008mRNA2118819021192612-
GWHAAZE00000008exon2118819021188333-
GWHAAZE00000008exon2118901321189117-
GWHAAZE00000008exon2119142021191547-
GWHAAZE00000008exon2119254321192612-
GWHAAZE00000008CDS2119254321192612-
GWHAAZE00000008CDS2119142021191547-
GWHAAZE00000008CDS2118901321189117-
GWHAAZE00000008CDS2118819021188333-
Transcript Sequence

Network for GWHGAAZE027509

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con51414.30E-54
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K06689UBE2D, UBC4, UBC5 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf309.345
SRR3591706second leaf118.675
SRR3591707mature leaf153.026
SRR3591708Shoot apex230.485
SRR3591709Stem391.163
SRR3591710White floral bud207.180
SRR3591711White flower331.006
SRR3591712Green floral bud219.713
SRR3591713Yellow flower392.235
SRP173429 SRR8316895Juvenile bud stage 148.362
SRR8316896Juvenile bud stage 213.133
SRR8316897Juvenile bud stage 102.662
SRR8316894Third green stage 83.531
SRR8316900Third green stage 206.057
SRR8316901Third green stage 230.066
SRR8316898Complete white stage 156.639
SRR8316899Complete white stage 402.072
SRR8316903Complete white stage 224.865
SRR8316902Silver flowering stage137.302
SRR8316904Silver flowering stage158.835
SRR8316905Silver flowering stage85.200
SRR8316906Gold flowering stage 339.849
SRR8316907Gold flowering stage 345.967
SRR8316908Gold flowering stage 374.808
SRP132670SRR6706286Control349.389
SRR6706287Light intensity 50%343.516
SRR6706288Light intensity 20%343.885
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1278.235
CNS0095593Slightly white alabastrum(diploid) 2326.699
CNS0095594Slightly white alabastrum(diploid) 3280.995
CNS0095595Whole white alabastrum(diploid) 2237.833
CNS0095596Whole white alabastrum(diploid) 3216.065
CNS0095597Whole white alabastrum(diploid) 4227.818
CNS0095598Silvery flower (diploied) 1334.153
CNS0095599Silvery flower (diploied) 2362.422
CNS0095600Silvery flower (diploied) 3379.317
CNS0095601Golden flower (diploid) 1401.724
CNS0095602Golden flower (diploid) 2399.446
CNS0095603Golden flower (diploid) 3410.364
CNS0095604Slightly white alabastrum(tetraploid) 1244.083
CNS0095605Slightly white alabastrum(tetraploid) 2214.925
CNS0095606Slightly white alabastrum(tetraploid) 3266.470
CNS0095607Whole white alabastrum(tetraploid) 1200.162
CNS0095608Whole white alabastrum(tetraploid) 2173.944
CNS0095609Whole white alabastrum(tetraploid) 3187.661
CNS0095610Silvery flower (tetraploid) 1361.490
CNS0095611Silvery flower (tetraploid) 2404.621
CNS0095612Silvery flower (tetraploid) 3361.582
CNS0095613Golden flower (tetraploid) 1412.846
CNS0095614Golden flower (tetraploid) 2414.641
CNS0095615Golden flower (tetraploid) 3546.787
CRA001975CRR073297Stem 1186.056
CRR073298Stem 2182.372
CRR073299Stem 3208.122
CRR073300Leaf 1196.189
CRR073301Leaf 2219.326
CRR073302Leaf 3184.205
CRR073303Juvenile bud 1230.493
CRR073304Juvenile bud 2213.858
CRR073305Juvenile bud 3215.291
CRR073306Third green 1178.249
CRR073307Third green 2187.065
CRR073308Third green 3167.195
CRR073309Second white 1223.999
CRR073310Second white 2196.441
CRR073311Second white 3124.155
CRR073312Silver flowering 1170.632
CRR073313Silver flowering 2165.914
CRR073314Silver flowering 3141.270
CRR073315Gold flowering 1118.982
CRR073316Gold flowering 2140.319
CRR073317Gold flowering 3116.927
CRR073318Tawny withering 1274.289
CRR073319Tawny withering 2271.779
CRR073320Tawny withering 3245.846