Gene detail

Detail information of GWHGAAZE027506

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273571.1	0	PREDICTED: crooked neck-like protein 1 [Vitis vinifera]
Swissprot	tr\|Q8GUP1\|CTF77_ARATH	1E-13	Cleavage stimulation factor subunit 77 {ECO:0000303\|PubMed:12379796}
trEMBL	tr\|A5BWC0\|A5BWC0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81550.1}
TAIR10	AT5G41770.1	0	crooked neck protein, putative / cell cycle protein, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	21081806	21088301	+
GWHAAZE00000008	mRNA	21081806	21088301	+
GWHAAZE00000008	exon	21081806	21082313	+
GWHAAZE00000008	exon	21082796	21083620	+
GWHAAZE00000008	exon	21083712	21083777	+
GWHAAZE00000008	exon	21084473	21084617	+
GWHAAZE00000008	exon	21084722	21084940	+
GWHAAZE00000008	exon	21087273	21087492	+
GWHAAZE00000008	exon	21087994	21088301	+
GWHAAZE00000008	five_prime_UTR	21081806	21081981	+
GWHAAZE00000008	CDS	21081982	21082313	+
GWHAAZE00000008	CDS	21082796	21083620	+
GWHAAZE00000008	CDS	21083712	21083777	+
GWHAAZE00000008	CDS	21084473	21084617	+
GWHAAZE00000008	CDS	21084722	21084940	+
GWHAAZE00000008	CDS	21087273	21087492	+
GWHAAZE00000008	CDS	21087994	21088301	+

Transcript Sequence
>GWHTAAZE027540 AAAATAAATTTACTCTGAGATATGTCCCCCTCTTCTTGAAGTCCAAACCCTAACCCTATACCAAACAAACTGTAATTCTCAACTTCCATTCCATTACCTCTCTCAATCTTTACCAAAACCCTAATCTCTTCCTCACGCACGTAATCTCTCTCTGTATTCCTCTCGGATCGATAATAATGGCGTCCAATAAAGATTCAGATCCATCTTTGGGGTATCTGACTCGCAAAGAAACCGAGGTGAAGCTCCCTCGTCCAACTAGGGTTAAGAACAAAACTCCGGCACCGATTCAGATCACCGCCGAGCAGATTCTCCGGGAAGCTCGAGAACGGCAAGAGGCTGAGATTCGACCGCCGAAGCAAAAAATCACCGATCCCTCAGAGTTAGCTGATTATCGTTTACGTAAGAGAAAAGAATTTGAAGACCTAATTAGGAGAGTGAGATGGAACAAGAGTGTGTGGGTGAAGTATGCCAAATGGGAAGAATCGCAAAAGGACTTCAATCGAGCCAGGTCAGTGTGGGAAAGAGCTTTGGATGTCGATTACAGGGATCACACAATGTGGTTAAAGTATGCAGATGTAGAAATGAAGAATAAGTTTATCAACCATGCTCGTAATGTGTGGGATAGAGCTGTTACTTTGTTGCCTAGGATCGATCAATTATGGTACAAGTATATTCATATGGAGGAAATGTTGGGTAATGTTGCTGGTGCGAGACAAATTTACGAGAGATGGATGAGTTGGGAGCCGGATCAACAAGCTTGGCTTTCGTATATCAAATTCGAGCTAAGGTACAATGAAATTGAGAGAGCAAGGGGTATATTTGAGAGATTTGTTAAGTGTCAGCCGAAAGTTGGGTCTTGGATTCGTTTTGCTAAATTCGAGATGAAGAATGGGGAGATTAGTAGGGCGAGGAATTGTTATGAGAGAGCTGTTGATTTGTTGGCTGATGATGAAGAGTCTGAGCAGTTGTTTGTGGCATTTGCTGAGTTTGAAGAAAAGTGTAAAGAGACTGAGAGGGCGCGGTGCATATACAAGTTTGCTCTTGATCATATACCAAAGGGTCGGGCTGAGGATTTGTATAGGAAGTTTGTAGCATTTGAGAAGCAGTATGGTGATAGAGAGGGAATTGAGGATGCGATTGTGGGGAAGAGAAGATTTCAATATGAGGAGGAGGTGAGAAAGAATCCGCTAAATTACGATTCTTGGTTTGATTACATTCGATTGGAAGAGAGTGTTGGCAGTAAAGCGAGGATAAGGGAGGTTTATGAGAGAGCAATTGCTAATGTACCTCCAGCTGCAGAGAAGCGCTATTGGCAGCGATACATTTATTTATGGATCAACTATGCTTTATATGAAGAGCTTGATGCGGAGGACATGGAGCGTACCAGAGATGTTTATAGTGAGTGTCTCAAGCTGATTCCCCATGAGAAATTTTCATTTGCAAAGATTTGGTTATTGGCTGCCCAGTTTGAGATAAGGCAACTAAATCTGAAGGGTTCCCGCCTAATCCTTGGAAATGCAATTGGAAAGGCTCCTAAAGATAAGATATTTAAAAAGTACATTGAAATAGAGCTGCAACTTGGTAACATAGATCGTTGCCGAAAACTGTATGAGAAGTATCTGGAGTGGTCACCAGAAAACTGCTATGCTTGGAGCAAGTATGCTGAGTTGGAGAGATCCTTGAGTGAAACTGAGCGAACTAGAGCCATCTTTGAGCTCGCAATTGCCCAGCCTGCATTGGATATGCCAGAATTGCTGTGGAAGGCATACATCGATTTTGAGATATCGGAGGGTGAATTTGAAAGAACTAGACAGCTTTATGAGAGGCTTTTGGACCGCACGAAGCACTTGAAGGTGTGGATTAGTTACGCCAAGTTTGAGGCATCTGCTATGGAAGAGGTTTACCAAGGTTCAGACTTGCCTGAAGATGATGTTCAAGAATCTCTTCGCGAACAGAAGAAACAATGCCTTCTGCGTGCTAGAAGAGTTTTCGATAGTGCTGTAAACTACTTCAGAACATCAGCCCCAGAGCTTAAAGAGGAAAGAGCAATGCTTTTGGAGGAGTGGCTCAATTTAGAGAGCAGCTTTGGCGAACTTGGTGATGTTAGTGTGGTCCGTGTTAAGCTCCCAAAGAAACTCAAAAAGAGACGGCAAATAGAAACCGAGGATGGCCCTGCCGGGTATGCTCACCAACTTTACGCTTTAATTTCAATCCTGGTAGCTTTTCAACCCCCCCTCCCTGCCACACGCGCACACACAAAACAATACAACCCTGCACACGCATGCTCTTAA

Network for GWHGAAZE027506

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02184.17	HAT	207	235	2.50E-11
PF13181.7	TPR_8	466	488	0.14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12869	CRN, CRNKL1, CLF1, SYF3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.073
	SRR3591706	second leaf	24.015
	SRR3591707	mature leaf	22.320
	SRR3591708	Shoot apex	40.448
	SRR3591709	Stem	30.501
	SRR3591710	White floral bud	35.351
	SRR3591711	White flower	42.313
	SRR3591712	Green floral bud	34.953
	SRR3591713	Yellow flower	33.838
SRP173429	SRR8316895	Juvenile bud stage	23.059
	SRR8316896	Juvenile bud stage	34.497
	SRR8316897	Juvenile bud stage	15.097
	SRR8316894	Third green stage	16.813
	SRR8316900	Third green stage	34.426
	SRR8316901	Third green stage	32.470
	SRR8316898	Complete white stage	11.242
	SRR8316899	Complete white stage	41.406
	SRR8316903	Complete white stage	27.455
	SRR8316902	Silver flowering stage	13.491
	SRR8316904	Silver flowering stage	22.278
	SRR8316905	Silver flowering stage	10.992
	SRR8316906	Gold flowering stage	32.170
	SRR8316907	Gold flowering stage	34.605
	SRR8316908	Gold flowering stage	37.583
SRP132670	SRR6706286	Control	30.340
	SRR6706287	Light intensity 50%	32.427
	SRR6706288	Light intensity 20%	31.296
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.468
	CNS0095593	Slightly white alabastrum(diploid) 2	18.650
	CNS0095594	Slightly white alabastrum(diploid) 3	21.489
	CNS0095595	Whole white alabastrum(diploid) 2	18.614
	CNS0095596	Whole white alabastrum(diploid) 3	16.115
	CNS0095597	Whole white alabastrum(diploid) 4	15.380
	CNS0095598	Silvery flower (diploied) 1	27.926
	CNS0095599	Silvery flower (diploied) 2	24.302
	CNS0095600	Silvery flower (diploied) 3	29.870
	CNS0095601	Golden flower (diploid) 1	21.784
	CNS0095602	Golden flower (diploid) 2	35.511
	CNS0095603	Golden flower (diploid) 3	34.783
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.305
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.959
	CNS0095606	Slightly white alabastrum(tetraploid) 3	51.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.170
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.039
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.367
	CNS0095610	Silvery flower (tetraploid) 1	37.093
	CNS0095611	Silvery flower (tetraploid) 2	31.094
	CNS0095612	Silvery flower (tetraploid) 3	26.293
	CNS0095613	Golden flower (tetraploid) 1	17.912
	CNS0095614	Golden flower (tetraploid) 2	31.880
	CNS0095615	Golden flower (tetraploid) 3	30.306
CRA001975	CRR073297	Stem 1	44.169
	CRR073298	Stem 2	42.113
	CRR073299	Stem 3	36.604
	CRR073300	Leaf 1	44.737
	CRR073301	Leaf 2	36.642
	CRR073302	Leaf 3	25.634
	CRR073303	Juvenile bud 1	30.407
	CRR073304	Juvenile bud 2	21.562
	CRR073305	Juvenile bud 3	37.729
	CRR073306	Third green 1	12.271
	CRR073307	Third green 2	9.788
	CRR073308	Third green 3	14.971
	CRR073309	Second white 1	9.955
	CRR073310	Second white 2	14.917
	CRR073311	Second white 3	16.727
	CRR073312	Silver flowering 1	13.286
	CRR073313	Silver flowering 2	11.222
	CRR073314	Silver flowering 3	14.365
	CRR073315	Gold flowering 1	14.691
	CRR073316	Gold flowering 2	26.135
	CRR073317	Gold flowering 3	18.284
	CRR073318	Tawny withering 1	26.985
	CRR073319	Tawny withering 2	21.211
	CRR073320	Tawny withering 3	22.323