Gene detail

Detail information of GWHGAAZE027497

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270595.3	0	PREDICTED: DNA primase small subunit [Vitis vinifera]
COG	YP_004004165.1	2E-11	DNA primase, small subunit
trEMBL	tr\|D7TVE8\|D7TVE8_VITVI	0	DNA primase {ECO:0000256\|RuleBase:RU003514}
TAIR10	AT5G41880.1	2E-163	DNA primases;DNA primases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	20893544	20898472	-
GWHAAZE00000008	mRNA	20893544	20898472	-
GWHAAZE00000008	exon	20893544	20893632	-
GWHAAZE00000008	exon	20893970	20894027	-
GWHAAZE00000008	exon	20894190	20894258	-
GWHAAZE00000008	exon	20894448	20894569	-
GWHAAZE00000008	exon	20894688	20894803	-
GWHAAZE00000008	exon	20895151	20895212	-
GWHAAZE00000008	exon	20895299	20895350	-
GWHAAZE00000008	exon	20895451	20895535	-
GWHAAZE00000008	exon	20896129	20896240	-
GWHAAZE00000008	exon	20896341	20896418	-
GWHAAZE00000008	exon	20896523	20896698	-
GWHAAZE00000008	exon	20896828	20896878	-
GWHAAZE00000008	exon	20898349	20898472	-
GWHAAZE00000008	CDS	20898349	20898472	-
GWHAAZE00000008	CDS	20896828	20896878	-
GWHAAZE00000008	CDS	20896523	20896698	-
GWHAAZE00000008	CDS	20896341	20896418	-
GWHAAZE00000008	CDS	20896129	20896240	-
GWHAAZE00000008	CDS	20895451	20895535	-
GWHAAZE00000008	CDS	20895299	20895350	-
GWHAAZE00000008	CDS	20895151	20895212	-
GWHAAZE00000008	CDS	20894688	20894803	-
GWHAAZE00000008	CDS	20894448	20894569	-
GWHAAZE00000008	CDS	20894190	20894258	-
GWHAAZE00000008	CDS	20893970	20894027	-
GWHAAZE00000008	CDS	20893544	20893632	-

Transcript Sequence
>GWHTAAZE027531 ATGATGAAAGAAGAAGATGAGAATGGAAGGTATGACATGTTAATCGATGGGCATGAGATTGAAAAGAGGCAAGATACTTCTGTTCCCGATGGATTCAACGCTAATTACCTTAGAGTTTATTATGGAAAGCTTTTCCCACTTGATGATATATTCAAATGGATGTCTTATGGAAATGATGGAAAGCATCCTGCATGTGACCAGTCCTATTTTGGGCGTAGAGAATTTTCATTCACGTTGGACAATGACATATACCTTCGGTTTCAGTCTTTCGGCAGTGTAATTGAACTGGACAATGCTATTAAGGAGAAATGTCCATTCAAAATAGATATTGGGCCCGTGTACAATGTTGATCCTGCCAAGAGGCATGCCTATTCACAAGCCGGTGACAACGTTTTCACTCCCGTGGAGAGGGAGCTAGTTTTTGATATAGATATGTCAGATTATGACGATGTTAGATATTGCTGCTCAGGAGCTGATGTTTGCTTGGATTGCTGGCCGTTGATGACAATTGCCATTAAAGTTCTTGATACCGCACTAAGAGATGATTTTGGATTCAATCACATTCTTTGGGTATACAGTGGCCGGCGTGGTGTCCACTGTTGGGTTTGTGATGGAAAGGCAAGAAGGTTGAATAATGAGCAAAGAGCGGCTATTACTGATTATTTTCGTGTGTACAAGGGCAACGACAATAGTCTTAAAAAGGTTTCTCTAGTGGGTCTTGCACTTCATCCGTTCCTTGCGAGATCTTATACTGACATTTTGAAAGATTTCTTTGAAGAGAAATTGCTTTGCAGTCAAAAGTTATTTTTAAGTGAAGATAGATATGAGAAAATATTGGAGATGATTCCAGATGAATCAATAACTTCAGAGCTTCGAGGAAAGTGGCAGGAGAACAGGCGTTCATCCAGTGCAAAAGAAGACATTAATGTTGTTCGATGGGAGCAACTAAAACATCTGCTTCAATCTGGGAAACATAAGGCACAAGGGCTTCGTAGGTGTGTTGAAGAGATTGTGTTCTCTTATGCATATCCTAGGCTTGATATGGAGGTTTCAAAACACATGAACCATTTGTTGAAGGCACCATTCTGTGTACACCCCAAAACTGGCCGTGTTTGTGTTCCTATCGATCCAAATTGTTGCGAGGAATTTGACCCAACAACTGTGCCAACCCTGTCGGAGGTAAACTTTTACTGA

Network for GWHGAAZE027497

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01896.20	DNA_primase_S	141	376	3.20E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02684	PRI1	DNA replication	map03030

Gene Ontology

GO term	Ontology	Name
GO:0006269	biological_process	DNA replication, synthesis of RNA primer
GO:0003896	molecular_function	DNA primase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.079
	SRR3591706	second leaf	0.722
	SRR3591707	mature leaf	0.095
	SRR3591708	Shoot apex	4.819
	SRR3591709	Stem	0.415
	SRR3591710	White floral bud	0.301
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.279
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.897
	SRR8316896	Juvenile bud stage	1.827
	SRR8316897	Juvenile bud stage	0.108
	SRR8316894	Third green stage	0.111
	SRR8316900	Third green stage	0.706
	SRR8316901	Third green stage	0.191
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.190
	SRR8316903	Complete white stage	0.127
	SRR8316902	Silver flowering stage	0.031
	SRR8316904	Silver flowering stage	0.039
	SRR8316905	Silver flowering stage	0.052
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.672
	SRR6706287	Light intensity 50%	0.528
	SRR6706288	Light intensity 20%	0.813
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.983
	CNS0095593	Slightly white alabastrum(diploid) 2	0.794
	CNS0095594	Slightly white alabastrum(diploid) 3	0.631
	CNS0095595	Whole white alabastrum(diploid) 2	0.331
	CNS0095596	Whole white alabastrum(diploid) 3	0.355
	CNS0095597	Whole white alabastrum(diploid) 4	0.196
	CNS0095598	Silvery flower (diploied) 1	1.141
	CNS0095599	Silvery flower (diploied) 2	1.183
	CNS0095600	Silvery flower (diploied) 3	0.334
	CNS0095601	Golden flower (diploid) 1	0.123
	CNS0095602	Golden flower (diploid) 2	0.069
	CNS0095603	Golden flower (diploid) 3	0.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.328
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.077
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.375
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.107
	CNS0095610	Silvery flower (tetraploid) 1	0.002
	CNS0095611	Silvery flower (tetraploid) 2	0.130
	CNS0095612	Silvery flower (tetraploid) 3	0.014
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.190
	CRR073298	Stem 2	2.000
	CRR073299	Stem 3	1.608
	CRR073300	Leaf 1	0.080
	CRR073301	Leaf 2	0.329
	CRR073302	Leaf 3	0.061
	CRR073303	Juvenile bud 1	0.115
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.073
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.024
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.045
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.008
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.040
	CRR073318	Tawny withering 1	1.208
	CRR073319	Tawny withering 2	1.291
	CRR073320	Tawny withering 3	1.670