Detail information of GWHGAAZE027490


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010325356.11.4836E-135PREDICTED: nucleoside diphosphate kinase 3-like [Solanum lycopersicum]
COGYP_001018825.15E-68nucleoside diphosphate kinase
Swissprottr|Q8RXA8|NDK4_SPIOL7E-133Nucleoside diphosphate kinase 4, chloroplastic (Precursor)
trEMBLtr|K4CPN9|K4CPN9_SOLLC6E-136Nucleoside diphosphate kinase {ECO:0000256|RuleBase:RU004013}
TAIR10AT4G23900.19E-94Nucleoside diphosphate kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2074329420747411-
GWHAAZE00000008mRNA2074329420747411-
GWHAAZE00000008exon2074732720747411-
GWHAAZE00000008exon2074646020746585-
GWHAAZE00000008exon2074520820745245-
GWHAAZE00000008exon2074506020745110-
GWHAAZE00000008exon2074442520744592-
GWHAAZE00000008exon2074422620744338-
GWHAAZE00000008exon2074329420743417-
GWHAAZE00000008CDS2074732720747411-
GWHAAZE00000008CDS2074646020746585-
GWHAAZE00000008CDS2074520820745245-
GWHAAZE00000008CDS2074506020745110-
GWHAAZE00000008CDS2074442520744592-
GWHAAZE00000008CDS2074422620744338-
GWHAAZE00000008CDS2074329420743417-
Transcript Sequence

Network for GWHGAAZE027490

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0257GO:0004550 nucleoside diphosphate kinase activity GOslim:molecular_function
GO:0006183 GTP biosynthetic process GOslim:biological_process
GO:0006228 UTP biosynthetic process GOslim:biological_process
GO:0006165 nucleoside diphosphate phosphorylation GOslim:biological_process
GO:0006241 CTP biosynthetic process GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00334.20NDK852181.80E-52
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00940ndk, NME Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Purine metabolismmap00230
Pyrimidine metabolismmap00240
Drug metabolism - other enzymesmap00983
MAPK signaling pathway - plantmap04016

Gene Ontology

GO term OntologyName
GO:0006165biological_processnucleoside diphosphate phosphorylation
GO:0006183biological_processGTP biosynthetic process
GO:0006228biological_processUTP biosynthetic process
GO:0006241biological_processCTP biosynthetic process
GO:0004550molecular_functionnucleoside diphosphate kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf71.373
SRR3591706second leaf163.396
SRR3591707mature leaf93.753
SRR3591708Shoot apex92.225
SRR3591709Stem62.357
SRR3591710White floral bud143.559
SRR3591711White flower125.183
SRR3591712Green floral bud302.643
SRR3591713Yellow flower57.928
SRP173429 SRR8316895Juvenile bud stage 95.252
SRR8316896Juvenile bud stage 165.916
SRR8316897Juvenile bud stage 96.761
SRR8316894Third green stage 82.703
SRR8316900Third green stage 324.230
SRR8316901Third green stage 280.316
SRR8316898Complete white stage 109.187
SRR8316899Complete white stage 196.985
SRR8316903Complete white stage 115.269
SRR8316902Silver flowering stage71.687
SRR8316904Silver flowering stage57.343
SRR8316905Silver flowering stage27.905
SRR8316906Gold flowering stage 95.279
SRR8316907Gold flowering stage 116.653
SRR8316908Gold flowering stage 117.591
SRP132670SRR6706286Control205.358
SRR6706287Light intensity 50%207.308
SRR6706288Light intensity 20%218.369
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1155.673
CNS0095593Slightly white alabastrum(diploid) 2177.676
CNS0095594Slightly white alabastrum(diploid) 3173.579
CNS0095595Whole white alabastrum(diploid) 2190.679
CNS0095596Whole white alabastrum(diploid) 3218.433
CNS0095597Whole white alabastrum(diploid) 4172.120
CNS0095598Silvery flower (diploied) 171.364
CNS0095599Silvery flower (diploied) 273.417
CNS0095600Silvery flower (diploied) 377.047
CNS0095601Golden flower (diploid) 143.483
CNS0095602Golden flower (diploid) 246.537
CNS0095603Golden flower (diploid) 347.163
CNS0095604Slightly white alabastrum(tetraploid) 1229.029
CNS0095605Slightly white alabastrum(tetraploid) 2215.002
CNS0095606Slightly white alabastrum(tetraploid) 3119.269
CNS0095607Whole white alabastrum(tetraploid) 1220.599
CNS0095608Whole white alabastrum(tetraploid) 2214.082
CNS0095609Whole white alabastrum(tetraploid) 3226.565
CNS0095610Silvery flower (tetraploid) 190.050
CNS0095611Silvery flower (tetraploid) 245.934
CNS0095612Silvery flower (tetraploid) 341.674
CNS0095613Golden flower (tetraploid) 126.291
CNS0095614Golden flower (tetraploid) 244.271
CNS0095615Golden flower (tetraploid) 310.659
CRA001975CRR073297Stem 1148.017
CRR073298Stem 2147.214
CRR073299Stem 3145.065
CRR073300Leaf 1241.241
CRR073301Leaf 2265.286
CRR073302Leaf 3341.036
CRR073303Juvenile bud 1357.997
CRR073304Juvenile bud 2389.371
CRR073305Juvenile bud 3212.220
CRR073306Third green 1111.050
CRR073307Third green 296.598
CRR073308Third green 378.171
CRR073309Second white 168.523
CRR073310Second white 241.447
CRR073311Second white 319.433
CRR073312Silver flowering 115.520
CRR073313Silver flowering 220.242
CRR073314Silver flowering 322.553
CRR073315Gold flowering 1175.807
CRR073316Gold flowering 2184.538
CRR073317Gold flowering 3131.816
CRR073318Tawny withering 198.738
CRR073319Tawny withering 2131.156
CRR073320Tawny withering 392.379