Detail information of GWHGAAZE027477


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010267576.13.55354E-76PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic-like isoform X1 [Nelumbo nucifera]
COGYP_007158093.19E-1130S ribosomal protein S6
Swissprottr|Q8VY91|RR6_ARATH7E-7130S ribosomal protein S6 alpha, chloroplastic (Precursor)
trEMBLtr|M0S692|M0S692_MUSAM6E-74Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P08510_001}
TAIR10AT1G64510.11E-55Translation elongation factor EF1B/ribosomal protein S6 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2048286120485380+
GWHAAZE00000008mRNA2048286120485380+
GWHAAZE00000008exon2048286120483050+
GWHAAZE00000008exon2048313220483262+
GWHAAZE00000008exon2048514120485380+
GWHAAZE00000008CDS2048286120483050+
GWHAAZE00000008CDS2048313220483262+
GWHAAZE00000008CDS2048514120485380+
Transcript Sequence

Network for GWHGAAZE027477

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01250.18Ribosomal_S6821801.10E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02990RP-S6, MRPS6, rpsF Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0019843molecular_functionrRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf62.565
SRR3591706second leaf189.661
SRR3591707mature leaf93.715
SRR3591708Shoot apex172.926
SRR3591709Stem13.969
SRR3591710White floral bud249.227
SRR3591711White flower210.077
SRR3591712Green floral bud54.648
SRR3591713Yellow flower313.074
SRP173429 SRR8316895Juvenile bud stage 48.909
SRR8316896Juvenile bud stage 47.419
SRR8316897Juvenile bud stage 39.093
SRR8316894Third green stage 23.650
SRR8316900Third green stage 101.607
SRR8316901Third green stage 69.899
SRR8316898Complete white stage 40.469
SRR8316899Complete white stage 32.042
SRR8316903Complete white stage 49.342
SRR8316902Silver flowering stage123.127
SRR8316904Silver flowering stage140.824
SRR8316905Silver flowering stage99.653
SRR8316906Gold flowering stage 302.349
SRR8316907Gold flowering stage 284.266
SRR8316908Gold flowering stage 286.553
SRP132670SRR6706286Control71.192
SRR6706287Light intensity 50%77.576
SRR6706288Light intensity 20%79.465
CNP0000432CNS0095592Slightly white alabastrum(diploid) 152.026
CNS0095593Slightly white alabastrum(diploid) 237.836
CNS0095594Slightly white alabastrum(diploid) 333.467
CNS0095595Whole white alabastrum(diploid) 244.338
CNS0095596Whole white alabastrum(diploid) 352.322
CNS0095597Whole white alabastrum(diploid) 433.837
CNS0095598Silvery flower (diploied) 1130.758
CNS0095599Silvery flower (diploied) 2108.873
CNS0095600Silvery flower (diploied) 3219.204
CNS0095601Golden flower (diploid) 1178.037
CNS0095602Golden flower (diploid) 2201.648
CNS0095603Golden flower (diploid) 3211.442
CNS0095604Slightly white alabastrum(tetraploid) 166.529
CNS0095605Slightly white alabastrum(tetraploid) 272.081
CNS0095606Slightly white alabastrum(tetraploid) 385.231
CNS0095607Whole white alabastrum(tetraploid) 129.566
CNS0095608Whole white alabastrum(tetraploid) 244.780
CNS0095609Whole white alabastrum(tetraploid) 393.528
CNS0095610Silvery flower (tetraploid) 1291.158
CNS0095611Silvery flower (tetraploid) 2489.302
CNS0095612Silvery flower (tetraploid) 3649.289
CNS0095613Golden flower (tetraploid) 1423.985
CNS0095614Golden flower (tetraploid) 2431.568
CNS0095615Golden flower (tetraploid) 31214.243
CRA001975CRR073297Stem 1103.458
CRR073298Stem 281.304
CRR073299Stem 3120.913
CRR073300Leaf 148.096
CRR073301Leaf 269.374
CRR073302Leaf 384.649
CRR073303Juvenile bud 154.139
CRR073304Juvenile bud 286.509
CRR073305Juvenile bud 340.800
CRR073306Third green 1258.841
CRR073307Third green 2226.880
CRR073308Third green 3193.951
CRR073309Second white 1572.976
CRR073310Second white 2364.564
CRR073311Second white 3328.922
CRR073312Silver flowering 1418.146
CRR073313Silver flowering 2386.041
CRR073314Silver flowering 3307.951
CRR073315Gold flowering 1180.684
CRR073316Gold flowering 2181.311
CRR073317Gold flowering 3171.815
CRR073318Tawny withering 125.621
CRR073319Tawny withering 226.170
CRR073320Tawny withering 324.762