Detail information of GWHGAAZE027476


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010055889.17.0672E-170PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A [Eucalyptus grandis]
Swissprottr|Q9SGW3|PSD8A_ARATH7E-15226S proteasome non-ATPase regulatory subunit 8 homolog A
trEMBLtr|A0A059C2K3|A0A059C2K3_EUCGR3E-170Uncharacterized protein {ECO:0000313|EMBL:KCW72444.1}
TAIR10AT1G64520.16E-108regulatory particle non-ATPase 12A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2047077320476002-
GWHAAZE00000008mRNA2047077320476002-
GWHAAZE00000008exon2047589820476002-
GWHAAZE00000008exon2047442120474499-
GWHAAZE00000008exon2047270520472807-
GWHAAZE00000008exon2047230520472568-
GWHAAZE00000008exon2047129020471401-
GWHAAZE00000008exon2047077320470913-
GWHAAZE00000008CDS2047589820476002-
GWHAAZE00000008CDS2047442120474499-
GWHAAZE00000008CDS2047270520472807-
GWHAAZE00000008CDS2047230520472568-
GWHAAZE00000008CDS2047129020471401-
GWHAAZE00000008CDS2047077320470913-
Transcript Sequence

Network for GWHGAAZE027476

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10075.10CSN8_PSD8_EIF3K1062421.70E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03031PSMD8, RPN12 Proteasome map03050

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf118.785
SRR3591706second leaf69.220
SRR3591707mature leaf48.757
SRR3591708Shoot apex105.619
SRR3591709Stem95.597
SRR3591710White floral bud163.602
SRR3591711White flower204.912
SRR3591712Green floral bud122.951
SRR3591713Yellow flower186.048
SRP173429 SRR8316895Juvenile bud stage 72.932
SRR8316896Juvenile bud stage 94.796
SRR8316897Juvenile bud stage 47.436
SRR8316894Third green stage 43.308
SRR8316900Third green stage 149.024
SRR8316901Third green stage 132.168
SRR8316898Complete white stage 95.032
SRR8316899Complete white stage 175.224
SRR8316903Complete white stage 117.411
SRR8316902Silver flowering stage110.996
SRR8316904Silver flowering stage123.952
SRR8316905Silver flowering stage62.996
SRR8316906Gold flowering stage 267.474
SRR8316907Gold flowering stage 258.702
SRR8316908Gold flowering stage 307.329
SRP132670SRR6706286Control105.966
SRR6706287Light intensity 50%110.590
SRR6706288Light intensity 20%127.273
CNP0000432CNS0095592Slightly white alabastrum(diploid) 188.326
CNS0095593Slightly white alabastrum(diploid) 2105.922
CNS0095594Slightly white alabastrum(diploid) 385.774
CNS0095595Whole white alabastrum(diploid) 283.392
CNS0095596Whole white alabastrum(diploid) 384.190
CNS0095597Whole white alabastrum(diploid) 478.852
CNS0095598Silvery flower (diploied) 189.151
CNS0095599Silvery flower (diploied) 284.667
CNS0095600Silvery flower (diploied) 3149.134
CNS0095601Golden flower (diploid) 181.919
CNS0095602Golden flower (diploid) 2127.065
CNS0095603Golden flower (diploid) 3127.377
CNS0095604Slightly white alabastrum(tetraploid) 191.962
CNS0095605Slightly white alabastrum(tetraploid) 285.883
CNS0095606Slightly white alabastrum(tetraploid) 3129.746
CNS0095607Whole white alabastrum(tetraploid) 158.117
CNS0095608Whole white alabastrum(tetraploid) 263.242
CNS0095609Whole white alabastrum(tetraploid) 3106.924
CNS0095610Silvery flower (tetraploid) 1176.812
CNS0095611Silvery flower (tetraploid) 2169.484
CNS0095612Silvery flower (tetraploid) 3206.065
CNS0095613Golden flower (tetraploid) 1163.739
CNS0095614Golden flower (tetraploid) 2167.816
CNS0095615Golden flower (tetraploid) 3268.419
CRA001975CRR073297Stem 1106.767
CRR073298Stem 288.652
CRR073299Stem 3116.837
CRR073300Leaf 1103.789
CRR073301Leaf 2103.167
CRR073302Leaf 3138.037
CRR073303Juvenile bud 1133.489
CRR073304Juvenile bud 2140.869
CRR073305Juvenile bud 3105.801
CRR073306Third green 1151.529
CRR073307Third green 2141.109
CRR073308Third green 3131.261
CRR073309Second white 1186.394
CRR073310Second white 2179.257
CRR073311Second white 3141.821
CRR073312Silver flowering 1147.893
CRR073313Silver flowering 2155.712
CRR073314Silver flowering 3118.971
CRR073315Gold flowering 170.278
CRR073316Gold flowering 278.666
CRR073317Gold flowering 354.403
CRR073318Tawny withering 1108.064
CRR073319Tawny withering 299.600
CRR073320Tawny withering 3124.617