Gene detail

Detail information of GWHGAAZE027460

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007039430.1	0	No lysine kinase 10 isoform 1 [Theobroma cacao]
COG	YP_003640725.1	8E-21	serine/threonine protein kinase
Swissprot	tr\|Q944Q0\|WNK8_ARATH	0	Serine/threonine-protein kinase WNK8
trEMBL	tr\|A0A061G2W9\|A0A061G2W9_THECC	0	No lysine kinase 10 isoform 1 {ECO:0000313\|EMBL:EOY23931.1}
TAIR10	AT5G41990.1	2E-157	with no lysine (K) kinase 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	20176343	20180042	-
GWHAAZE00000008	mRNA	20176343	20180042	-
GWHAAZE00000008	exon	20176343	20176920	-
GWHAAZE00000008	exon	20177016	20177415	-
GWHAAZE00000008	exon	20177909	20178066	-
GWHAAZE00000008	exon	20178172	20178392	-
GWHAAZE00000008	exon	20178814	20179041	-
GWHAAZE00000008	exon	20179184	20179221	-
GWHAAZE00000008	exon	20179914	20180042	-
GWHAAZE00000008	CDS	20179914	20180042	-
GWHAAZE00000008	CDS	20179184	20179221	-
GWHAAZE00000008	CDS	20178814	20179041	-
GWHAAZE00000008	CDS	20178172	20178392	-
GWHAAZE00000008	CDS	20177909	20178066	-
GWHAAZE00000008	CDS	20177016	20177415	-
GWHAAZE00000008	CDS	20176343	20176920	-

Transcript Sequence
>GWHTAAZE027494 ATGGATCCAGAGGCAGTTGGTTTCTTGTTTCCTGGAGATGAAGTGCTTGACAAATTAAAACCAAACTCAAAATTTGAGCTTAATGGTGTTGATGTTGTTGAGAAATCCCCTAACCAGCGATACGTTCGGTATAATGAAATCTTGGGGAGAGGGGCATTCAAAACTGTATATAGGGGATTTGATGAAGTTGATGGAATAGAAGTTGCTTGGAACCAAGTTAGTATTGATGATGTACTGCAGTCACCGGAGCATCTAGAGAGATTGTATTCTGAGGTTCACCTGCTAAAAACATTGAAGCATGAAAATATAATCAAGTCCTACATCTCTTGGGTTGATGATGAGAACAAAACTATTAACATGATTACGGAATTGTTTAATTCTGGGAGTTTGAGGCAATATCGACGGAAGCATAAGAGTGTTGATATGAGTGCCATCAAGAATTGGGCTAGGCAGATTCTCCGAGGTTTAGACTATCTCCATGCTCACGATCCACCTATAATTCATAGAGATTTAAAATGTGACAATATTTTTGTTAATGGAAATCATGGAGAAGTTAAGATTGGAGATCTAGGATTTGCGGCAATAATGCAGCAGTCTACTGCTCGAAGTGTTATTGGAACTCCCGAATTCATGGCTCCCGAGCTATATGAAGAGGAATACAATGAACTTGTCGATATATACTCTTTTGGCATGTGCATGCTAGAGTTGATTACTTGTGAATATCCGTATAGTGAATGCAAAAATCAAGCACAAATATATAAGAAGGTCACTTCAGGGATAAGGCCAGCTGCCCTTGGTAAAGTGAAGGACCCCCAACTGAAACAGTTTGTTGAGAGGTGTCTGGTTCCAGCCTGCCAGAGGTTGCCTGCAGCAGAGCTATTGAAAGATCCCTTCCTTTCATCATCTGAAAATTCAGAGGAGCTCAAATGCGATCTTTTGCAGCTGCCCAAGTCAATAAATTTGATGAAGCCACCTCGTAATTGTCTTACAATGGACATTGACCCTAACTATTTTAAGGTTACAGGTAGCACTAATGTGAATGGCATGAATGGATTTCCTCTTTTTTCTACTCTAGAGATGCAGGCACACAATGAGAGAAACGAATTCAGAGTAAAAGGGGAGAGATATGATGATAAATCAATTTCATTAACGTTGCGTATTGCTGGCTTGCAAGGTAGGGCGAGGAACATTCATTTTATGTTTTATCTCAACTCTGATACTGCAGTCTCCATTGCCGGTGAGATGGTTGAACAACTTGGTTTGTTGAATGAAGATGTGGCTTTTATAGCCGAGTTGATTGACAACTTAATCTTAAAATTAGTGCCCACGTGGAAACCTTCGGTTGAAAGTTCCATTGGATTGCGGACTTCATTAAACAAGGATCTTGGGCTTTCTTTGCATAAAGCAGATAATTATTCAATGAGAGTATCAGTAACAAATACCAACAATAATTATAATAATTATAGACATGCCTCGAAGGATAGCGTTGGTGACTTTGTGATGATAAGTGGTTGTTCAAAGAATTCAGGTATCTCCTTTGCTGATTCGAACAATGATTTGAGCATTTCTTCTTCTGTATCTATGGCCAGCAAAGATAATGAGAAAGATGAGCAGTGTGATGAGCTGAAGATAGAGCTTGACGCAATTGAGACACAATATCAGCAGTGTTGTAGTGAACTATTGAGGATGAGAGAGGAGGCCATTGAAAATGCAAGAAAGAGGTGGATCACGAAGAAGATGGTTGTTGTGTGA

Network for GWHGAAZE027460

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	45	299	3.20E-51
PF12202.9	OSR1_C	395	437	5.50E-05

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	WNK_NRBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.485
	SRR3591706	second leaf	1.590
	SRR3591707	mature leaf	2.066
	SRR3591708	Shoot apex	7.325
	SRR3591709	Stem	8.772
	SRR3591710	White floral bud	18.053
	SRR3591711	White flower	5.626
	SRR3591712	Green floral bud	15.224
	SRR3591713	Yellow flower	6.295
SRP173429	SRR8316895	Juvenile bud stage	4.478
	SRR8316896	Juvenile bud stage	11.357
	SRR8316897	Juvenile bud stage	4.548
	SRR8316894	Third green stage	4.861
	SRR8316900	Third green stage	16.032
	SRR8316901	Third green stage	12.564
	SRR8316898	Complete white stage	1.868
	SRR8316899	Complete white stage	4.896
	SRR8316903	Complete white stage	2.024
	SRR8316902	Silver flowering stage	2.305
	SRR8316904	Silver flowering stage	4.572
	SRR8316905	Silver flowering stage	1.691
	SRR8316906	Gold flowering stage	6.738
	SRR8316907	Gold flowering stage	5.040
	SRR8316908	Gold flowering stage	4.043
SRP132670	SRR6706286	Control	4.537
	SRR6706287	Light intensity 50%	4.150
	SRR6706288	Light intensity 20%	3.729
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.305
	CNS0095593	Slightly white alabastrum(diploid) 2	14.612
	CNS0095594	Slightly white alabastrum(diploid) 3	22.306
	CNS0095595	Whole white alabastrum(diploid) 2	27.758
	CNS0095596	Whole white alabastrum(diploid) 3	28.405
	CNS0095597	Whole white alabastrum(diploid) 4	37.418
	CNS0095598	Silvery flower (diploied) 1	6.932
	CNS0095599	Silvery flower (diploied) 2	8.219
	CNS0095600	Silvery flower (diploied) 3	4.914
	CNS0095601	Golden flower (diploid) 1	4.903
	CNS0095602	Golden flower (diploid) 2	4.396
	CNS0095603	Golden flower (diploid) 3	4.097
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.774
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.596
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.479
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.703
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.672
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.417
	CNS0095610	Silvery flower (tetraploid) 1	4.687
	CNS0095611	Silvery flower (tetraploid) 2	5.417
	CNS0095612	Silvery flower (tetraploid) 3	9.006
	CNS0095613	Golden flower (tetraploid) 1	4.453
	CNS0095614	Golden flower (tetraploid) 2	4.290
	CNS0095615	Golden flower (tetraploid) 3	6.653
CRA001975	CRR073297	Stem 1	3.868
	CRR073298	Stem 2	4.721
	CRR073299	Stem 3	2.458
	CRR073300	Leaf 1	5.953
	CRR073301	Leaf 2	5.010
	CRR073302	Leaf 3	2.439
	CRR073303	Juvenile bud 1	5.218
	CRR073304	Juvenile bud 2	2.711
	CRR073305	Juvenile bud 3	1.958
	CRR073306	Third green 1	1.969
	CRR073307	Third green 2	1.568
	CRR073308	Third green 3	1.320
	CRR073309	Second white 1	0.735
	CRR073310	Second white 2	1.317
	CRR073311	Second white 3	1.241
	CRR073312	Silver flowering 1	3.201
	CRR073313	Silver flowering 2	2.235
	CRR073314	Silver flowering 3	1.834
	CRR073315	Gold flowering 1	2.921
	CRR073316	Gold flowering 2	2.252
	CRR073317	Gold flowering 3	0.391
	CRR073318	Tawny withering 1	4.897
	CRR073319	Tawny withering 2	4.044
	CRR073320	Tawny withering 3	5.064