Gene detail

Detail information of GWHGAAZE027433

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006380285.1	0	hypothetical protein POPTR_0007s01690g [Populus trichocarpa]
Swissprot	tr\|O04153\|CALR3_ARATH	0	Calreticulin-3 (Precursor)
trEMBL	tr\|M0RSC8\|M0RSC8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P14980_001}
TAIR10	AT1G08450.1	8E-148	calreticulin 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	19788132	19794344	+
GWHAAZE00000008	mRNA	19788132	19794344	+
GWHAAZE00000008	exon	19788132	19788237	+
GWHAAZE00000008	exon	19790198	19790390	+
GWHAAZE00000008	exon	19791610	19791868	+
GWHAAZE00000008	exon	19792033	19792089	+
GWHAAZE00000008	exon	19792270	19792317	+
GWHAAZE00000008	exon	19792508	19792594	+
GWHAAZE00000008	exon	19792693	19792750	+
GWHAAZE00000008	exon	19792861	19792928	+
GWHAAZE00000008	exon	19793587	19793643	+
GWHAAZE00000008	exon	19793771	19793860	+
GWHAAZE00000008	exon	19794273	19794344	+
GWHAAZE00000008	CDS	19788132	19788237	+
GWHAAZE00000008	CDS	19790198	19790390	+
GWHAAZE00000008	CDS	19791610	19791868	+
GWHAAZE00000008	CDS	19792033	19792089	+
GWHAAZE00000008	CDS	19792270	19792317	+
GWHAAZE00000008	CDS	19792508	19792594	+
GWHAAZE00000008	CDS	19792693	19792750	+
GWHAAZE00000008	CDS	19792861	19792928	+
GWHAAZE00000008	CDS	19793587	19793643	+
GWHAAZE00000008	CDS	19793771	19793860	+
GWHAAZE00000008	CDS	19794273	19794344	+

Transcript Sequence
>GWHTAAZE027467 GGGTGGCAGAGCAGGTGGGTAAAGTCTGATTGGAAAAAAAGTGAAGGGAAGGCGGGTTCATTCAAGCACACTGCTGGAAAGTGGTCTGGTGACCCAGACGATAAAGGCATCCAGACATCCAGCGATGCCAAACATTTTGCTATATCTGCGAAGATACCGGAATTTAGCAACAAGAATAGGACTTTGGTCCTTCAATATTCCATAAAATTTGAACAGGACATTGAATGCGGTGGTGGTTACATAAAGCTTCTCTCTGGAATTGTTAATCAAAAGAAATTTGGTGGGGACACCCCTTACAGTTTGATGTTCGGGCCAGATTTATGTGGCACGCAGACGAAGAAGCTTCATGTTATCCTTTCTTACCAAGGACAGAATTACCCCATAAAGAAGGATCTGGAATGTGAAACAGACAAGCTAACCCATTTCTACACATTTATTCTTAGGCCTGATGCATCATATAGCATCCTAATTGATGGTCGGGAAAGAGATTCTGGAAGCATGTATGCTGACTGGGATATCCTACCTCCCCGCAAAATTAGAGCTGTGAATGCAAAAAAGCCTGCTGATTGGGATGATAGAGAATATATTGAAGATCCGAATGATGTCAAACCTGAGGGATATGATTCAATTCTGCGAGAAATTCCTGATCCAAAAGCAAAACAGCCTGATAATTGGGATGAACAAGAGAATGGTATATGGAGACCGCCAAAGGTGCCTAATCCAGCGTACAGAGGACCGTGGAAGCGCAAGAAAATAAAAAATCCCAACTACAAGGGGAAATGGAGAATTCCTTGGATTGATAACCCAGAATTTGAAGATGATCCTGACCTTTATGTACTGAAGCCAATTAAATACGTGGGTATTGAAGTATGGCAGGCTGAAAAAGAAGCCTTTGAGGAAGCAGAAAAAGTGAGAAAAGCACAAGAGGAAGAGGAGGCCCGAAGAGCTAGAGAGGAAGGTGAAAGGAGGAAGAGAGAGAGGGGTTATGATCGTCGTTATCGAGATAGGGACAGATATAGAAGGCGTGATCGCCGTGACTACATGGATGATTATCATGTAAGCACAAAAAATTTATTTACTTTTATTTCATCCTAG

Network for GWHGAAZE027433

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00262.19	Calreticulin	2	230	1.70E-55
PF00262.19	Calreticulin	231	296	3.20E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08057	CALR	Protein processing in endoplasmic reticulum	map04141
		Phagosome	map04145
		Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0005783	cellular_component	endoplasmic reticulum
GO:0005509	molecular_function	calcium ion binding
GO:0051082	molecular_function	unfolded protein binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	176.087
	SRR3591706	second leaf	106.018
	SRR3591707	mature leaf	155.222
	SRR3591708	Shoot apex	129.217
	SRR3591709	Stem	137.013
	SRR3591710	White floral bud	140.998
	SRR3591711	White flower	187.689
	SRR3591712	Green floral bud	141.565
	SRR3591713	Yellow flower	221.953
SRP173429	SRR8316895	Juvenile bud stage	85.664
	SRR8316896	Juvenile bud stage	109.505
	SRR8316897	Juvenile bud stage	47.070
	SRR8316894	Third green stage	44.148
	SRR8316900	Third green stage	134.882
	SRR8316901	Third green stage	144.194
	SRR8316898	Complete white stage	74.611
	SRR8316899	Complete white stage	250.808
	SRR8316903	Complete white stage	109.945
	SRR8316902	Silver flowering stage	81.260
	SRR8316904	Silver flowering stage	112.316
	SRR8316905	Silver flowering stage	61.025
	SRR8316906	Gold flowering stage	201.277
	SRR8316907	Gold flowering stage	127.833
	SRR8316908	Gold flowering stage	142.703
SRP132670	SRR6706286	Control	205.921
	SRR6706287	Light intensity 50%	173.401
	SRR6706288	Light intensity 20%	157.446
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	113.263
	CNS0095593	Slightly white alabastrum(diploid) 2	90.188
	CNS0095594	Slightly white alabastrum(diploid) 3	91.981
	CNS0095595	Whole white alabastrum(diploid) 2	84.103
	CNS0095596	Whole white alabastrum(diploid) 3	75.016
	CNS0095597	Whole white alabastrum(diploid) 4	78.744
	CNS0095598	Silvery flower (diploied) 1	236.920
	CNS0095599	Silvery flower (diploied) 2	158.206
	CNS0095600	Silvery flower (diploied) 3	190.556
	CNS0095601	Golden flower (diploid) 1	151.383
	CNS0095602	Golden flower (diploid) 2	256.611
	CNS0095603	Golden flower (diploid) 3	255.162
	CNS0095604	Slightly white alabastrum(tetraploid) 1	76.175
	CNS0095605	Slightly white alabastrum(tetraploid) 2	68.035
	CNS0095606	Slightly white alabastrum(tetraploid) 3	157.447
	CNS0095607	Whole white alabastrum(tetraploid) 1	52.503
	CNS0095608	Whole white alabastrum(tetraploid) 2	44.842
	CNS0095609	Whole white alabastrum(tetraploid) 3	153.885
	CNS0095610	Silvery flower (tetraploid) 1	171.203
	CNS0095611	Silvery flower (tetraploid) 2	139.738
	CNS0095612	Silvery flower (tetraploid) 3	119.395
	CNS0095613	Golden flower (tetraploid) 1	69.877
	CNS0095614	Golden flower (tetraploid) 2	128.732
	CNS0095615	Golden flower (tetraploid) 3	71.639
CRA001975	CRR073297	Stem 1	102.167
	CRR073298	Stem 2	109.342
	CRR073299	Stem 3	82.663
	CRR073300	Leaf 1	112.344
	CRR073301	Leaf 2	113.130
	CRR073302	Leaf 3	93.012
	CRR073303	Juvenile bud 1	89.149
	CRR073304	Juvenile bud 2	94.937
	CRR073305	Juvenile bud 3	102.949
	CRR073306	Third green 1	41.869
	CRR073307	Third green 2	43.098
	CRR073308	Third green 3	42.879
	CRR073309	Second white 1	53.766
	CRR073310	Second white 2	45.189
	CRR073311	Second white 3	30.327
	CRR073312	Silver flowering 1	84.046
	CRR073313	Silver flowering 2	89.582
	CRR073314	Silver flowering 3	93.276
	CRR073315	Gold flowering 1	83.987
	CRR073316	Gold flowering 2	143.460
	CRR073317	Gold flowering 3	133.097
	CRR073318	Tawny withering 1	103.910
	CRR073319	Tawny withering 2	113.859
	CRR073320	Tawny withering 3	99.282