Detail information of GWHGAAZE027425


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009775047.11.2435E-110PREDICTED: protein PHR1-LIKE 1-like [Nicotiana sylvestris]
Swissprottr|Q8GUN5|PHL1_ARATH7E-63Protein PHR1-LIKE 1
trEMBLtr|A0A067JIQ6|A0A067JIQ6_JATCU2E-109Uncharacterized protein {ECO:0000313|EMBL:KDP23727.1}
TAIR10AT5G29000.21E-52Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1967464819677237-
GWHAAZE00000008mRNA1967464819677237-
GWHAAZE00000008exon1967464819674709-
GWHAAZE00000008exon1967519519675234-
GWHAAZE00000008exon1967531819675394-
GWHAAZE00000008exon1967579019675952-
GWHAAZE00000008exon1967658419677237-
GWHAAZE00000008CDS1967658419677237-
GWHAAZE00000008CDS1967579019675952-
GWHAAZE00000008CDS1967531819675394-
GWHAAZE00000008CDS1967519519675234-
GWHAAZE00000008CDS1967464819674709-
Transcript Sequence

Network for GWHGAAZE027425

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding2503014.00E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGARP-G2-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.188
SRR3591706second leaf28.535
SRR3591707mature leaf26.955
SRR3591708Shoot apex33.565
SRR3591709Stem31.762
SRR3591710White floral bud23.667
SRR3591711White flower36.580
SRR3591712Green floral bud15.640
SRR3591713Yellow flower37.369
SRP173429 SRR8316895Juvenile bud stage 18.012
SRR8316896Juvenile bud stage 22.017
SRR8316897Juvenile bud stage 9.239
SRR8316894Third green stage 8.364
SRR8316900Third green stage 16.740
SRR8316901Third green stage 16.666
SRR8316898Complete white stage 13.306
SRR8316899Complete white stage 35.682
SRR8316903Complete white stage 18.664
SRR8316902Silver flowering stage16.997
SRR8316904Silver flowering stage24.159
SRR8316905Silver flowering stage11.476
SRR8316906Gold flowering stage 38.848
SRR8316907Gold flowering stage 36.582
SRR8316908Gold flowering stage 41.398
SRP132670SRR6706286Control22.158
SRR6706287Light intensity 50%20.629
SRR6706288Light intensity 20%18.969
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.434
CNS0095593Slightly white alabastrum(diploid) 215.453
CNS0095594Slightly white alabastrum(diploid) 312.152
CNS0095595Whole white alabastrum(diploid) 29.523
CNS0095596Whole white alabastrum(diploid) 310.115
CNS0095597Whole white alabastrum(diploid) 411.852
CNS0095598Silvery flower (diploied) 131.813
CNS0095599Silvery flower (diploied) 223.366
CNS0095600Silvery flower (diploied) 332.586
CNS0095601Golden flower (diploid) 127.485
CNS0095602Golden flower (diploid) 238.113
CNS0095603Golden flower (diploid) 336.052
CNS0095604Slightly white alabastrum(tetraploid) 115.454
CNS0095605Slightly white alabastrum(tetraploid) 211.642
CNS0095606Slightly white alabastrum(tetraploid) 330.781
CNS0095607Whole white alabastrum(tetraploid) 112.246
CNS0095608Whole white alabastrum(tetraploid) 26.632
CNS0095609Whole white alabastrum(tetraploid) 314.445
CNS0095610Silvery flower (tetraploid) 134.974
CNS0095611Silvery flower (tetraploid) 233.637
CNS0095612Silvery flower (tetraploid) 328.545
CNS0095613Golden flower (tetraploid) 127.694
CNS0095614Golden flower (tetraploid) 234.789
CNS0095615Golden flower (tetraploid) 365.000
CRA001975CRR073297Stem 139.153
CRR073298Stem 237.295
CRR073299Stem 334.733
CRR073300Leaf 126.327
CRR073301Leaf 223.387
CRR073302Leaf 321.501
CRR073303Juvenile bud 123.407
CRR073304Juvenile bud 219.868
CRR073305Juvenile bud 328.601
CRR073306Third green 119.775
CRR073307Third green 220.844
CRR073308Third green 320.176
CRR073309Second white 120.173
CRR073310Second white 230.192
CRR073311Second white 325.748
CRR073312Silver flowering 130.288
CRR073313Silver flowering 230.456
CRR073314Silver flowering 324.334
CRR073315Gold flowering 135.106
CRR073316Gold flowering 254.922
CRR073317Gold flowering 328.139
CRR073318Tawny withering 136.072
CRR073319Tawny withering 236.866
CRR073320Tawny withering 340.352