Gene detail

Detail information of GWHGAAZE027419

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278934.2	0	PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Vitis vinifera]
Swissprot	tr\|Q9SWF9\|ZFNL_PEA	0	Zinc finger CCCH domain-containing protein ZFN-like
trEMBL	tr\|F6GX27\|F6GX27_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44513.1}
TAIR10	AT3G02830.1	1E-139	zinc finger protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	19590974	19599690	+
GWHAAZE00000008	mRNA	19590974	19599690	+
GWHAAZE00000008	exon	19590974	19591129	+
GWHAAZE00000008	exon	19592525	19592591	+
GWHAAZE00000008	exon	19592816	19592838	+
GWHAAZE00000008	exon	19592973	19593092	+
GWHAAZE00000008	exon	19595092	19595370	+
GWHAAZE00000008	exon	19598032	19598382	+
GWHAAZE00000008	exon	19599394	19599690	+
GWHAAZE00000008	CDS	19590974	19591129	+
GWHAAZE00000008	CDS	19592525	19592591	+
GWHAAZE00000008	CDS	19592816	19592838	+
GWHAAZE00000008	CDS	19592973	19593092	+
GWHAAZE00000008	CDS	19595092	19595370	+
GWHAAZE00000008	CDS	19598032	19598382	+
GWHAAZE00000008	CDS	19599394	19599690	+

Transcript Sequence
>GWHTAAZE027453 GCATTGTGGCAAATGAACTTGAGATCAGGGGAAACAATGGAATCTGGGCCTTATCCCGTGCGTGATGGGGAGCCAGACTGTTCTTATTACATCAGAACAGGCCTATGTAGATTTGGGACAGCATGTCGATTCAATCATCCTCCAAACAGGAAACTGGCTATTGCCACTGCAAGGATGCGAGGAGAGTACCCCGAAAGAATAGGGCAACCGGAATGTCAGGCATTTTTTGGCTGGGAAAGGGATGTGTACTACTTGAAGACGGGAACTTGCAAGTTTGGAGGCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCGCTAAATGTTTTAGGCTATCCAATTCGAACGAATGAGATTGAATGTGCTTATTATTTGAGAACGGGACAATGCAAGTTTGGAAGCACTTGTAAATTTCACCATCCTCAACCATCAAATATGATGGTCTCATTTGGTGGTTCTACTGTTTATCCTCCTGTCCATTCTCCAACAACTCAAGGAGGAATTACAAATTGGCCCTTGTCCAGAGCTTCATTTATTTCCAGTCCTCGTTGGCAAGGCCCTTCAAGTTATGCACCTATGATTCTGCCTCAGGGAGTGGTGTCAGTTCCAGGATGGAATGCCTACAGTGGTCAGGGTTCACTGTCATCTCCAGAGAGCCAACAACAACAAACAGGTGGAAACAGTCAGATTTATGGAACTTCGCGACAGACCAGTGCAGCAGCAGCAGCAGCTAATTTAGTTGGATCTCAAGGGGCATTTTCATCATACCGTTCTTCTGGCACTTCTGTACCTGTAGGATATTATGCATTGCAGAGGGAGAATGTATTCCCTGAGAGACCTGGCCAGCCCGAATGCCAATTTTACATGAAGACTGGAGACTGTAAGTTTGGTGCAGTTTGCAGGTTCCATCATCCTAGAGAGAGACTCATTCCTGCACCTGACTGTGTCTTGAGTCCCATCGGCCTTCCTTTACGTCCGGGAGAACCATTGTGCATATTTTATTCTCGTTATGGAATCTGCAAATTTGGTCCAAGTTGCAAGTTCGACCACCCAATGGGAGTGTTTACATATAATCAGTCTGTATCGTCTTCCTCTGAAGCTCCAGTTCGGCATTTGTTGGCATCATCATCCTCTTCAACTGGTGCATTAAGTTTGACTTCGGAAGGGCTAATTGAAGGAGGAGGAGGCTCTGTTAAGTCAAGGCGGCTCTCACTCTCAGAGACTACAAGACAGATGCCTTCTTCCGGTGATAATAACATTGGCACAGAGGGATGA

Network for GWHGAAZE027419

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	23	48	3.00E-07
PF00642.25	zf-CCCH	83	102	6.10E-07
PF00642.25	zf-CCCH	126	148	1.70E-09
PF00642.25	zf-CCCH	287	312	1.00E-08
PF00642.25	zf-CCCH	333	358	3.00E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.566
	SRR3591706	second leaf	65.279
	SRR3591707	mature leaf	90.377
	SRR3591708	Shoot apex	45.224
	SRR3591709	Stem	59.367
	SRR3591710	White floral bud	154.370
	SRR3591711	White flower	30.752
	SRR3591712	Green floral bud	82.799
	SRR3591713	Yellow flower	31.717
SRP173429	SRR8316895	Juvenile bud stage	14.854
	SRR8316896	Juvenile bud stage	21.922
	SRR8316897	Juvenile bud stage	9.493
	SRR8316894	Third green stage	9.692
	SRR8316900	Third green stage	34.566
	SRR8316901	Third green stage	30.032
	SRR8316898	Complete white stage	9.014
	SRR8316899	Complete white stage	29.431
	SRR8316903	Complete white stage	13.599
	SRR8316902	Silver flowering stage	12.355
	SRR8316904	Silver flowering stage	17.407
	SRR8316905	Silver flowering stage	7.432
	SRR8316906	Gold flowering stage	23.476
	SRR8316907	Gold flowering stage	20.724
	SRR8316908	Gold flowering stage	21.413
SRP132670	SRR6706286	Control	42.264
	SRR6706287	Light intensity 50%	42.189
	SRR6706288	Light intensity 20%	38.803
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.045
	CNS0095593	Slightly white alabastrum(diploid) 2	20.383
	CNS0095594	Slightly white alabastrum(diploid) 3	24.629
	CNS0095595	Whole white alabastrum(diploid) 2	53.450
	CNS0095596	Whole white alabastrum(diploid) 3	56.403
	CNS0095597	Whole white alabastrum(diploid) 4	85.303
	CNS0095598	Silvery flower (diploied) 1	22.998
	CNS0095599	Silvery flower (diploied) 2	36.039
	CNS0095600	Silvery flower (diploied) 3	30.635
	CNS0095601	Golden flower (diploid) 1	20.534
	CNS0095602	Golden flower (diploid) 2	31.320
	CNS0095603	Golden flower (diploid) 3	26.837
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.107
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.875
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.090
	CNS0095607	Whole white alabastrum(tetraploid) 1	75.359
	CNS0095608	Whole white alabastrum(tetraploid) 2	106.695
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.392
	CNS0095610	Silvery flower (tetraploid) 1	30.112
	CNS0095611	Silvery flower (tetraploid) 2	47.604
	CNS0095612	Silvery flower (tetraploid) 3	49.500
	CNS0095613	Golden flower (tetraploid) 1	16.069
	CNS0095614	Golden flower (tetraploid) 2	20.444
	CNS0095615	Golden flower (tetraploid) 3	25.685
CRA001975	CRR073297	Stem 1	23.277
	CRR073298	Stem 2	17.969
	CRR073299	Stem 3	19.780
	CRR073300	Leaf 1	40.270
	CRR073301	Leaf 2	31.107
	CRR073302	Leaf 3	21.718
	CRR073303	Juvenile bud 1	51.651
	CRR073304	Juvenile bud 2	36.773
	CRR073305	Juvenile bud 3	30.033
	CRR073306	Third green 1	52.901
	CRR073307	Third green 2	43.245
	CRR073308	Third green 3	48.637
	CRR073309	Second white 1	15.171
	CRR073310	Second white 2	18.111
	CRR073311	Second white 3	14.066
	CRR073312	Silver flowering 1	24.014
	CRR073313	Silver flowering 2	23.430
	CRR073314	Silver flowering 3	18.671
	CRR073315	Gold flowering 1	54.291
	CRR073316	Gold flowering 2	60.193
	CRR073317	Gold flowering 3	62.489
	CRR073318	Tawny withering 1	41.092
	CRR073319	Tawny withering 2	41.344
	CRR073320	Tawny withering 3	37.032