Gene detail

Detail information of GWHGAAZE027411

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270960.3	0	PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
COG	YP_001518904.1	0.00000006	WD repeat-containing protein
Swissprot	tr\|Q93VR9\|SEH1_ARATH	1E-155	Protein SEH1 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|A5BBL2\|A5BBL2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN61200.1}
TAIR10	AT1G64350.1	8E-125	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	19396328	19400754	+
GWHAAZE00000008	mRNA	19396328	19400754	+
GWHAAZE00000008	exon	19396328	19396486	+
GWHAAZE00000008	exon	19397630	19397741	+
GWHAAZE00000008	exon	19397928	19398028	+
GWHAAZE00000008	exon	19398895	19398972	+
GWHAAZE00000008	exon	19399441	19399596	+
GWHAAZE00000008	exon	19399898	19400010	+
GWHAAZE00000008	exon	19400299	19400425	+
GWHAAZE00000008	exon	19400623	19400754	+
GWHAAZE00000008	CDS	19396328	19396486	+
GWHAAZE00000008	CDS	19397630	19397741	+
GWHAAZE00000008	CDS	19397928	19398028	+
GWHAAZE00000008	CDS	19398895	19398972	+
GWHAAZE00000008	CDS	19399441	19399596	+
GWHAAZE00000008	CDS	19399898	19400010	+
GWHAAZE00000008	CDS	19400299	19400425	+
GWHAAZE00000008	CDS	19400623	19400754	+

Transcript Sequence
>GWHTAAZE027445 ATGGAGCAGACTGTGGTGACTCTGGATAAAGGAACAACGTGCTCTTCATGGAATTATAATGGCCAAAGATTGGCTACTGGCTCCGCTGATGGAACTTTGGCTTTCTTCGACTCCATTGATCCTGCTTCTTCCTCTTTCACCTGTACTTCGAGATCTAAGGTTCATGAGGCTAGCATTGTGAAAGTTGTTTGGGTTCCTCCAGAATATGGTGATGCAGTTGCATGCATTTGTTCAGATGGAACTTTGTCGCTGTGGGAGGAAGTTGTAGAAGATACAGAACCTCTTCAATGGAAACTGTGCAAATGCTTGGACCAAAAGTCAAATAAAGTCCTTGATATTCAATTTGGAGTCTCCATCAAAACTTTGAGATTGGTCTCTGCACATTCTGATGGCCATGTAAAGGTGTATGAGCTCTTAGACATATTGGACTTGAAGAAATGGCAACTTCAGGCTGAATTTCAGAATGTCATTGAGTCATTATCTAAATTTGGGAAGGCTTTGTGCTTGTCTGCCTCCATCTCTTGGAATCCACGAAGAAGTGAAAACCAGCAGTCAAGCTTTGTTCTTGGGTTTAATTCAGATATTCCACAGTTGAATTCCTCTAAGGTCTGGGAATTTGACGAGGATCATCAGAGATGGCTTCCAGTTGCAGAGTTGGCTTTGCCCGGGGACCAGGGTGATCAAGTTTACACTGTTGCATGTTCACCCAATATTGGCAGGCCATATGAGGTGATAGCTGTTGCAACTAACAAAGGAATTGCGATATGGCATGTGGGATCTGAACCGGACACGAGCGGAAGGCTCTCGGTAGGGAGAGTGGCATTGCTCTCTGGCCATAAAGGAGAGGTGTGGGAGATGGTGTGGGACATGAGTGGAATGACACTTGCAAGTACAGGGAGTGATGGGGTGGTGAGATTGTGGCAGTCCAACTTAAAGGGGGTTTGGCACCAACAGGCTTCTATTCAACCTACGCCCTAG

Network for GWHGAAZE027411

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	276	307	0.0013

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14299	SEH1	RNA transport	map03013
K14299	SEH1	mTOR signaling pathway	map04150

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.783
	SRR3591706	second leaf	4.796
	SRR3591707	mature leaf	4.502
	SRR3591708	Shoot apex	21.970
	SRR3591709	Stem	11.232
	SRR3591710	White floral bud	8.909
	SRR3591711	White flower	16.747
	SRR3591712	Green floral bud	14.466
	SRR3591713	Yellow flower	6.914
SRP173429	SRR8316895	Juvenile bud stage	5.750
	SRR8316896	Juvenile bud stage	7.030
	SRR8316897	Juvenile bud stage	3.228
	SRR8316894	Third green stage	1.886
	SRR8316900	Third green stage	6.798
	SRR8316901	Third green stage	5.989
	SRR8316898	Complete white stage	0.879
	SRR8316899	Complete white stage	7.118
	SRR8316903	Complete white stage	0.877
	SRR8316902	Silver flowering stage	1.133
	SRR8316904	Silver flowering stage	1.280
	SRR8316905	Silver flowering stage	0.949
	SRR8316906	Gold flowering stage	1.753
	SRR8316907	Gold flowering stage	2.137
	SRR8316908	Gold flowering stage	2.238
SRP132670	SRR6706286	Control	4.927
	SRR6706287	Light intensity 50%	5.410
	SRR6706288	Light intensity 20%	4.757
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.404
	CNS0095593	Slightly white alabastrum(diploid) 2	10.341
	CNS0095594	Slightly white alabastrum(diploid) 3	9.926
	CNS0095595	Whole white alabastrum(diploid) 2	8.016
	CNS0095596	Whole white alabastrum(diploid) 3	7.130
	CNS0095597	Whole white alabastrum(diploid) 4	5.676
	CNS0095598	Silvery flower (diploied) 1	10.508
	CNS0095599	Silvery flower (diploied) 2	7.629
	CNS0095600	Silvery flower (diploied) 3	5.009
	CNS0095601	Golden flower (diploid) 1	8.400
	CNS0095602	Golden flower (diploid) 2	4.708
	CNS0095603	Golden flower (diploid) 3	4.424
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.948
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.534
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.819
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.369
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.621
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.542
	CNS0095610	Silvery flower (tetraploid) 1	6.244
	CNS0095611	Silvery flower (tetraploid) 2	9.997
	CNS0095612	Silvery flower (tetraploid) 3	3.100
	CNS0095613	Golden flower (tetraploid) 1	3.282
	CNS0095614	Golden flower (tetraploid) 2	5.382
	CNS0095615	Golden flower (tetraploid) 3	2.544
CRA001975	CRR073297	Stem 1	5.917
	CRR073298	Stem 2	6.849
	CRR073299	Stem 3	6.662
	CRR073300	Leaf 1	5.234
	CRR073301	Leaf 2	6.356
	CRR073302	Leaf 3	6.881
	CRR073303	Juvenile bud 1	7.140
	CRR073304	Juvenile bud 2	3.678
	CRR073305	Juvenile bud 3	4.525
	CRR073306	Third green 1	0.935
	CRR073307	Third green 2	1.286
	CRR073308	Third green 3	0.491
	CRR073309	Second white 1	1.617
	CRR073310	Second white 2	0.523
	CRR073311	Second white 3	1.268
	CRR073312	Silver flowering 1	0.957
	CRR073313	Silver flowering 2	0.658
	CRR073314	Silver flowering 3	1.684
	CRR073315	Gold flowering 1	4.793
	CRR073316	Gold flowering 2	4.595
	CRR073317	Gold flowering 3	4.951
	CRR073318	Tawny withering 1	8.444
	CRR073319	Tawny withering 2	6.145
	CRR073320	Tawny withering 3	6.203