Gene detail

Detail information of GWHGAAZE027410

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP19349.1	0	unnamed protein product [Coffea canephora]
COG	YP_593054.1	9E-20	serine/threonin protein kinase
Swissprot	tr\|Q1PFB9\|AGC17_ARATH	0	Serine/threonine-protein kinase AGC1-7 {ECO:0000305}
trEMBL	tr\|A0A068VFM0\|A0A068VFM0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_446 {ECO:0000313\|EMBL:CDP19349.1}
TAIR10	AT3G12690.3	0	AGC kinase 1.5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	19227705	19229658	-
GWHAAZE00000008	mRNA	19227705	19229658	-
GWHAAZE00000008	exon	19227705	19228572	-
GWHAAZE00000008	exon	19228994	19229658	-
GWHAAZE00000008	CDS	19228994	19229658	-
GWHAAZE00000008	CDS	19227705	19228572	-

Transcript Sequence
>GWHTAAZE027444 ATGGATCAATTTCCCAAAACTGATGCAAATTCTATTAGTACCCAACCATGTGAATCCAAAAAGGTGGACCCAATTACAAAGCTAGGTGCCAATCCTTGTACTTATCCATGCCCCTTGCCAAGCCCAAGGATGATAACAAATTCTGAACACTTGACAACATCACATAGCAACAAGTTAAATGATGAAAAGAGTAATCATTTTGTCACCAATCACTATCGTGGAAGTGGTAATAATACTCGTAGTGATAGCTTAGAGAGCTCTGGTGCACCCCTCAAGCCCCATACTGGTGGTGATGTTCGATGGGATGCCATTAACTCAATTGCTTTCAAAGATTCCTCTCTTGGTCTTAGTCATTTTCGTCTGTTAAAGAGACTTGGCTATGGAGATATTGGAAGTGTCTATCTTGTTGAGCTCAGTGGAACTAATGCTTACTTTGCCATGAAAGTCATGGACAAGGGGTCCCTTGCCAGTAGAAATAAGCTACTTCGAGCTCAAACAGAAAGGGAAATTCTTGGTCTTCTTGACCACCCATTCTTGCCTACTCTATATTCTTACTTTGAGACTGAAAAATTTTATTGTTTGGTCATGGAGTTTTGCAGTGGAGGTAATCTACATAGTCTTCGACAGAAGCAAGCAAACAAGTATTTCACAGAAGAAGCTGCTAGGTTTTATGCATCTGAGGTGTTGTTGGCACTTGAGTATCTACATATGCTAGGCATTGTATATAGAGATTTGAAGCCAGAAAATGTGCTAGTAAGAGAAGAGGGTCATATTATGCTTTCTGATTTTGACCTATCACTTCGTTGCTCTGTCAGTCCAACACTTGTAAAGTCCTCTTCTGTACATGTAGGCAATGGTGGTAGTGGAGCTAATGGGGGTATTTTAGATGACGAGCATACAATACATGGGTGTATTCAGCCATCAAATTTTCTCCCACGCATCCTACCTACAAAGAAAAACCGCAAATCTAAATCAGATTTTGGCTTGTTTGTTAAAGGATCCCTCCCAGAACTAATGGCAGAGCCCACTGATGTCCGTTCAATGTCATTTGTTGGAACGCATGAATATTTAGCCCCAGAGATTATAAGAGGAGAAGGTCATGGTAGTGCAGTGGATTGGTGGACATTTGGCATCTTCTTATATGAGCTTTTGCATGGGACAACCCCTTTCAAGGGCTCAGGAAATCGTGCCACACTTTTTAATGTCGTAGGCCAGCCATTAAGATTTCCTGAAAGTTCACAAGTGAGTTTTGTGGCCCGAGATCTTATACGGGGGCTTTTAGTGAAAGAACCTAACAAGCGAATTGCATATAGAAGGGGCGCAACAGAAATAAAACAGCACCCATTTTTTGAGGGTGTGAATTGGGCATTGGTGAGAAGCGCAGTTCCTCCCCATATACCTGAACCGGTAGACTTTGGGCATTTTGCTAGTAAAAAGGCAGCTCACTCGGAAAAGAAGATGACTGAAATTGGAGTTGATAGAAACAAGAGTAGTTCAAGTGATTCCTCCTACATTGACTTTGAATACTTTTAA

Network for GWHGAAZE027410

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	120	273	1.90E-37
PF00069.26	Pkinase	301	450	1.50E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.080
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.054
	SRR3591710	White floral bud	5.607
	SRR3591711	White flower	0.097
	SRR3591712	Green floral bud	8.651
	SRR3591713	Yellow flower	0.052
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.060
	SRR8316897	Juvenile bud stage	0.068
	SRR8316894	Third green stage	0.044
	SRR8316900	Third green stage	2.312
	SRR8316901	Third green stage	1.761
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.253
	SRR8316904	Silver flowering stage	0.152
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.914
	SRR6706287	Light intensity 50%	0.976
	SRR6706288	Light intensity 20%	0.855
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.633
	CNS0095593	Slightly white alabastrum(diploid) 2	0.781
	CNS0095594	Slightly white alabastrum(diploid) 3	0.168
	CNS0095595	Whole white alabastrum(diploid) 2	3.755
	CNS0095596	Whole white alabastrum(diploid) 3	4.994
	CNS0095597	Whole white alabastrum(diploid) 4	5.701
	CNS0095598	Silvery flower (diploied) 1	0.199
	CNS0095599	Silvery flower (diploied) 2	1.697
	CNS0095600	Silvery flower (diploied) 3	0.268
	CNS0095601	Golden flower (diploid) 1	0.434
	CNS0095602	Golden flower (diploid) 2	0.295
	CNS0095603	Golden flower (diploid) 3	0.650
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.979
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.194
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.560
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.722
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.626
	CNS0095610	Silvery flower (tetraploid) 1	0.283
	CNS0095611	Silvery flower (tetraploid) 2	0.708
	CNS0095612	Silvery flower (tetraploid) 3	2.166
	CNS0095613	Golden flower (tetraploid) 1	0.278
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.972
CRA001975	CRR073297	Stem 1	0.222
	CRR073298	Stem 2	0.103
	CRR073299	Stem 3	0.111
	CRR073300	Leaf 1	1.267
	CRR073301	Leaf 2	0.752
	CRR073302	Leaf 3	0.709
	CRR073303	Juvenile bud 1	1.400
	CRR073304	Juvenile bud 2	2.412
	CRR073305	Juvenile bud 3	0.152
	CRR073306	Third green 1	1.011
	CRR073307	Third green 2	1.126
	CRR073308	Third green 3	1.029
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.201
	CRR073311	Second white 3	0.327
	CRR073312	Silver flowering 1	0.566
	CRR073313	Silver flowering 2	0.284
	CRR073314	Silver flowering 3	0.440
	CRR073315	Gold flowering 1	1.188
	CRR073316	Gold flowering 2	0.188
	CRR073317	Gold flowering 3	0.711
	CRR073318	Tawny withering 1	1.565
	CRR073319	Tawny withering 2	0.944
	CRR073320	Tawny withering 3	1.632