Gene detail

Detail information of GWHGAAZE027408

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009782012.1	0	PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|Q941Q3\|C3H37_ARATH	2E-156	Zinc finger CCCH domain-containing protein 37
trEMBL	tr\|A0A068VET8\|A0A068VET8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_446 {ECO:0000313\|EMBL:CDP19345.1}
TAIR10	AT3G12680.1	2E-128	floral homeotic protein (HUA1)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	19137857	19150997	-
GWHAAZE00000008	mRNA	19137857	19150997	-
GWHAAZE00000008	exon	19150770	19150997	-
GWHAAZE00000008	exon	19143692	19143751	-
GWHAAZE00000008	exon	19143526	19143603	-
GWHAAZE00000008	exon	19143373	19143435	-
GWHAAZE00000008	exon	19143057	19143266	-
GWHAAZE00000008	exon	19139984	19140021	-
GWHAAZE00000008	exon	19139806	19139852	-
GWHAAZE00000008	exon	19139579	19139703	-
GWHAAZE00000008	exon	19139173	19139226	-
GWHAAZE00000008	exon	19137857	19138108	-
GWHAAZE00000008	CDS	19150770	19150997	-
GWHAAZE00000008	CDS	19143692	19143751	-
GWHAAZE00000008	CDS	19143526	19143603	-
GWHAAZE00000008	CDS	19143373	19143435	-
GWHAAZE00000008	CDS	19143057	19143266	-
GWHAAZE00000008	CDS	19139984	19140021	-
GWHAAZE00000008	CDS	19139806	19139852	-
GWHAAZE00000008	CDS	19139579	19139703	-
GWHAAZE00000008	CDS	19139173	19139226	-
GWHAAZE00000008	CDS	19137857	19138108	-

Transcript Sequence
>GWHTAAZE027442 ATGGGTACCCATAATACGATTGGGCATACTGAAGCTTGGTTTTCTACCAACCCTTTAGCCAAACGCCCTCGATTCGAGAATGCAAGCAACTTGCCTATTTATCCGCAGAGGCCAGGAGAGAAGGATTGTGCCCATTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCAGAGGGTGGAATCCCAGATTGGAAAGAGGTCGCACTTGATTCTACAAGCGAAGCCCTTCCCCAAAGGCCAGGAGAACCAGATTGTCCTTATTTTCTGAAGACTCAAAAATGCAAGTTTGGTCTTAGGTGCAAATTCAACCACCCAAAAGACAAATTGGCTCCTTTGGGTGGTCTAGAAGATGCGGATGTTTCCCTCTTACCTGAAAGGCCATCTGAACCCCCGTGCGCTTTCTATATGAAGACCGGAAAATGTAAATTTGGCGCAACCTGCAAATTCCATCATCCAAAGGATATCTTGATACCATTAGCTCAACATGGAAATGGCTGTATTGGGCAGAATGAAGTAGTTAAGCATGAAACTACTGGAGACCTGGATCCTGTTAAGCCACTTTTTACTCCAGCATTATTGCATAACTCCAAAGGTCTTCCTGTCAGACCGGGTGAGGTGGATTGTCCCTTCTACCTTAAAACTGGCAGTTGCAAGTATGGTGCTACTTGTCGTTACAATCATCCAGACAGATACGCTTTCAATCCGTTTGGTGCTGGCTCTGCCTTCGTTGCATCGCCTCTGGCCCACTTGAACATTGGTGTTGTTAATCCAGCTGCCTCTATCCTGCAAACCATAGATTCGGGGCTGAATCAGACTACGCTTGCAATTATCCCGACTATGTACCCTCAACGACCTGGACAGACTGAATGCGATTTCTATATGAAAACTGGGGAATGTAAGTTTGGAGAGAGATGCAAATATCATCACCCTATGGATCGGTCTGTACAATCTCTTTCTGCAAATGAAGCGCACCAACAAAATGTGAAGCTCACCCTTGCAGGCCTTCCTAGGAGAGAGGTATGTGTAGGGTGTTTCATAAAATATCAAAAGATAGACAGTGTAATGTACGCTGAGATGTGCAATCGTTATCTACAAGAGAAATTAGGATTTTTTTTAAACAAGTGA

Network for GWHGAAZE027408

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	39	63	1.10E-08
PF00642.25	zf-CCCH	91	116	6.60E-09
PF00642.25	zf-CCCH	139	163	4.10E-10
PF00642.25	zf-CCCH	214	238	4.40E-10
PF00642.25	zf-CCCH	296	321	2.80E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.025
	SRR3591706	second leaf	27.035
	SRR3591707	mature leaf	28.060
	SRR3591708	Shoot apex	45.639
	SRR3591709	Stem	36.441
	SRR3591710	White floral bud	33.217
	SRR3591711	White flower	35.643
	SRR3591712	Green floral bud	38.925
	SRR3591713	Yellow flower	35.703
SRP173429	SRR8316895	Juvenile bud stage	31.227
	SRR8316896	Juvenile bud stage	41.621
	SRR8316897	Juvenile bud stage	19.218
	SRR8316894	Third green stage	16.048
	SRR8316900	Third green stage	39.378
	SRR8316901	Third green stage	42.520
	SRR8316898	Complete white stage	11.278
	SRR8316899	Complete white stage	41.396
	SRR8316903	Complete white stage	26.327
	SRR8316902	Silver flowering stage	13.746
	SRR8316904	Silver flowering stage	19.957
	SRR8316905	Silver flowering stage	8.608
	SRR8316906	Gold flowering stage	30.602
	SRR8316907	Gold flowering stage	31.857
	SRR8316908	Gold flowering stage	35.653
SRP132670	SRR6706286	Control	48.404
	SRR6706287	Light intensity 50%	42.861
	SRR6706288	Light intensity 20%	42.928
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.175
	CNS0095593	Slightly white alabastrum(diploid) 2	28.422
	CNS0095594	Slightly white alabastrum(diploid) 3	29.970
	CNS0095595	Whole white alabastrum(diploid) 2	20.641
	CNS0095596	Whole white alabastrum(diploid) 3	22.638
	CNS0095597	Whole white alabastrum(diploid) 4	21.382
	CNS0095598	Silvery flower (diploied) 1	30.037
	CNS0095599	Silvery flower (diploied) 2	25.368
	CNS0095600	Silvery flower (diploied) 3	37.783
	CNS0095601	Golden flower (diploid) 1	26.398
	CNS0095602	Golden flower (diploid) 2	42.096
	CNS0095603	Golden flower (diploid) 3	37.692
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.135
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.301
	CNS0095606	Slightly white alabastrum(tetraploid) 3	62.585
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.690
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.489
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.819
	CNS0095610	Silvery flower (tetraploid) 1	44.864
	CNS0095611	Silvery flower (tetraploid) 2	42.871
	CNS0095612	Silvery flower (tetraploid) 3	51.813
	CNS0095613	Golden flower (tetraploid) 1	34.850
	CNS0095614	Golden flower (tetraploid) 2	43.210
	CNS0095615	Golden flower (tetraploid) 3	51.358
CRA001975	CRR073297	Stem 1	68.842
	CRR073298	Stem 2	65.429
	CRR073299	Stem 3	78.907
	CRR073300	Leaf 1	65.569
	CRR073301	Leaf 2	63.883
	CRR073302	Leaf 3	63.149
	CRR073303	Juvenile bud 1	50.234
	CRR073304	Juvenile bud 2	38.584
	CRR073305	Juvenile bud 3	62.869
	CRR073306	Third green 1	34.403
	CRR073307	Third green 2	25.301
	CRR073308	Third green 3	33.957
	CRR073309	Second white 1	33.104
	CRR073310	Second white 2	42.563
	CRR073311	Second white 3	42.630
	CRR073312	Silver flowering 1	43.065
	CRR073313	Silver flowering 2	40.424
	CRR073314	Silver flowering 3	42.450
	CRR073315	Gold flowering 1	28.466
	CRR073316	Gold flowering 2	42.275
	CRR073317	Gold flowering 3	33.073
	CRR073318	Tawny withering 1	54.411
	CRR073319	Tawny withering 2	47.803
	CRR073320	Tawny withering 3	62.867