Gene detail

Detail information of GWHGAAZE027382

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097664.1	1.7562E-154	PREDICTED: putative serine/threonine-protein kinase isoform X1 [Sesamum indicum]
COG	YP_008151634.1	0.0000003	hypothetical protein SCE1572_26190
Swissprot	tr\|C0LGE0\|Y1765_ARATH	1E-60	Probable LRR receptor-like serine/threonine-protein kinase At1g07650 (Precursor)
trEMBL	tr\|B9SVD1\|B9SVD1_RICCO	5E-152	ATP binding protein, putative {ECO:0000313\|EMBL:EEF32427.1}
TAIR10	AT1G16670.1	2E-59	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	18610924	18613136	-
GWHAAZE00000008	mRNA	18610924	18613136	-
GWHAAZE00000008	exon	18610924	18611298	-
GWHAAZE00000008	exon	18611388	18611617	-
GWHAAZE00000008	exon	18612088	18612298	-
GWHAAZE00000008	exon	18612422	18612537	-
GWHAAZE00000008	exon	18613064	18613136	-
GWHAAZE00000008	CDS	18613064	18613136	-
GWHAAZE00000008	CDS	18612422	18612537	-
GWHAAZE00000008	CDS	18612088	18612298	-
GWHAAZE00000008	CDS	18611388	18611617	-
GWHAAZE00000008	CDS	18610924	18611298	-

Transcript Sequence
>GWHTAAZE027416 ATGACTTGTTTCTCATTCTTATTCCGTAGGAGAGTGAACTCACAAACTAGACGCTTTACTGAGCTTGAAGAAGAGCTTTCTGGCGCCCACAATGTGAATCTTTATTCCTACAAGGAGCTACAAGTGGCAACTGATGATTTTAGTCAGGCAAATAAAATTGGGGAGGGTGGATTTGGTTCTGTCTATAAGGGAATGCTCAAATATGGGAAGGTTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAGACAAGGAGCAAGGGAGTTCTTGACGGAGATTAAAGTGATTTCTGATATAGAGCATGAAAACTTAGTGAAACTTATTGGCTGTTGCGCTGAAGACAGTCACAGAATTTTGGTCTATAGCTACCTTGAGAACAACAGCCTCGCACAAACACTTCTTGGCATTATGAATTTCATATCGGTTTCATCTCTCTCTCTCTCTCTCTCTCGTGTACTTAACATTGACTATTGTTGTTTCAGAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCAGTTGACTCGCAAAGCAGATGTTTACAGTTTTGGTGTGCTGCTTATGGAAATTGTCAGCGGGAGATGCAACACAAACACACGATTACCTATAGAAGATCAATATCTTCTTGAAAGGACATGGCAACTTTACGAGAGAAGGGAGTTGGTGGGACTGGTAGACACATCATTAAATGGGGAATTTGATGCAGAAGAGGCTTGCAAATTCTTGAAGATTGGTCTGCTCTGCACCCAAGACACCCCAAAGCTTCGGCCTTCCATGTCAACTGTGGTGAAGATGCTAAACGGCGAGGTGAACGTTGATGACGATACGATAACGAAGCCAGGCTTAATCTCTGATTTCATGGACCTCAAGATTAGAAGCGGGCCTAATCCTAAGCCTGATATAAGTGTATCGTCTGGCTTAGACAATCTTGAGAATTCAACCTTGTCATCGGGAGACTCGTCTCAAGCAACCATGACGTTTACATCAGTATGTGACCGCAGCATTTGA

Network for GWHGAAZE027382

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	48	133	7.20E-16
PF07714.18	PK_Tyr_Ser-Thr	162	265	2.40E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.687
	SRR3591706	second leaf	10.598
	SRR3591707	mature leaf	16.087
	SRR3591708	Shoot apex	10.716
	SRR3591709	Stem	24.340
	SRR3591710	White floral bud	17.164
	SRR3591711	White flower	31.650
	SRR3591712	Green floral bud	10.653
	SRR3591713	Yellow flower	31.687
SRP173429	SRR8316895	Juvenile bud stage	17.633
	SRR8316896	Juvenile bud stage	18.043
	SRR8316897	Juvenile bud stage	16.487
	SRR8316894	Third green stage	4.171
	SRR8316900	Third green stage	7.012
	SRR8316901	Third green stage	8.303
	SRR8316898	Complete white stage	4.354
	SRR8316899	Complete white stage	25.866
	SRR8316903	Complete white stage	7.547
	SRR8316902	Silver flowering stage	13.497
	SRR8316904	Silver flowering stage	13.096
	SRR8316905	Silver flowering stage	8.638
	SRR8316906	Gold flowering stage	54.883
	SRR8316907	Gold flowering stage	50.689
	SRR8316908	Gold flowering stage	65.580
SRP132670	SRR6706286	Control	13.047
	SRR6706287	Light intensity 50%	15.322
	SRR6706288	Light intensity 20%	14.817
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.063
	CNS0095593	Slightly white alabastrum(diploid) 2	13.153
	CNS0095594	Slightly white alabastrum(diploid) 3	13.722
	CNS0095595	Whole white alabastrum(diploid) 2	8.985
	CNS0095596	Whole white alabastrum(diploid) 3	4.375
	CNS0095597	Whole white alabastrum(diploid) 4	8.128
	CNS0095598	Silvery flower (diploied) 1	26.396
	CNS0095599	Silvery flower (diploied) 2	33.317
	CNS0095600	Silvery flower (diploied) 3	26.694
	CNS0095601	Golden flower (diploid) 1	50.877
	CNS0095602	Golden flower (diploid) 2	42.123
	CNS0095603	Golden flower (diploid) 3	39.310
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.117
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.109
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.582
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.933
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.109
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.185
	CNS0095610	Silvery flower (tetraploid) 1	27.832
	CNS0095611	Silvery flower (tetraploid) 2	18.651
	CNS0095612	Silvery flower (tetraploid) 3	28.872
	CNS0095613	Golden flower (tetraploid) 1	36.938
	CNS0095614	Golden flower (tetraploid) 2	30.741
	CNS0095615	Golden flower (tetraploid) 3	27.710
CRA001975	CRR073297	Stem 1	8.968
	CRR073298	Stem 2	7.124
	CRR073299	Stem 3	7.730
	CRR073300	Leaf 1	5.526
	CRR073301	Leaf 2	7.178
	CRR073302	Leaf 3	6.403
	CRR073303	Juvenile bud 1	7.598
	CRR073304	Juvenile bud 2	6.339
	CRR073305	Juvenile bud 3	8.078
	CRR073306	Third green 1	11.434
	CRR073307	Third green 2	10.432
	CRR073308	Third green 3	8.666
	CRR073309	Second white 1	15.857
	CRR073310	Second white 2	11.811
	CRR073311	Second white 3	11.753
	CRR073312	Silver flowering 1	22.548
	CRR073313	Silver flowering 2	21.942
	CRR073314	Silver flowering 3	14.790
	CRR073315	Gold flowering 1	30.165
	CRR073316	Gold flowering 2	29.895
	CRR073317	Gold flowering 3	17.790
	CRR073318	Tawny withering 1	8.255
	CRR073319	Tawny withering 2	22.325
	CRR073320	Tawny withering 3	5.161