Gene detail

Detail information of GWHGAAZE027368

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13641.1	2.1099E-100	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LTT3\|HMG10_ARATH	4E-79	High mobility group B protein 10
trEMBL	tr\|A0A068UZ09\|A0A068UZ09_COFCA	8E-101	Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313\|EMBL:CDP13641.1}
TAIR10	AT3G13350.1	5E-65	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	18346338	18349465	+
GWHAAZE00000008	mRNA	18346338	18349465	+
GWHAAZE00000008	exon	18346338	18346519	+
GWHAAZE00000008	exon	18347249	18347423	+
GWHAAZE00000008	exon	18348595	18348757	+
GWHAAZE00000008	exon	18348847	18348924	+
GWHAAZE00000008	exon	18349026	18349465	+
GWHAAZE00000008	CDS	18346338	18346519	+
GWHAAZE00000008	CDS	18347249	18347423	+
GWHAAZE00000008	CDS	18348595	18348757	+
GWHAAZE00000008	CDS	18348847	18348924	+
GWHAAZE00000008	CDS	18349026	18349465	+

Transcript Sequence
>GWHTAAZE027402 ATGTCGAACGACCCATACCCATACCAACCTTCTTCACTAAACCCTTCTTCACACAGTGGCCAATCCAACTCCTCTTCTTACCCTGAACCAGATGCCGACTTTGAAGATATCTATCGAAACCCTCAGATTTTCGCCGATAAGCTTCATGCTTTCCACCGATCCTTCGGTATCATCAATTACAAATATATGGAAAAAGGTGAATATCTCTTGGTAGAGAGAGAGGATCTAACTGGTTTTTATTTATTTTTACCCACTGTGCTTCTTAGAGTCCCTACTATTGGAGGAAAGACTTTGGACTTACACCGCCTTTTTGTGGAGGTCACATCTCGAGGTGGCATTGAAAAGGTATCCTTATCAGTTATAAGGGATCGCAAATGGAAGGAAATTGGTCAGGCCTTCAATTTCCCATCTACTATAACAAGTGCATCGTTTGTCTTAAGGAAGTTCTATCTATCATTGCTTTATCACTTTGAGCAGGTTTATTACTTGCGCAAAAGAGCCCCTTCAACCATAGCAGATGAGTCTATAAGCAGGATTACCAATGGATCTCCGGCCCTCAATTTTCTCGAGGATGGTGCCACTATGAGTCAATTTTCAGTAATTAGTAATCTGTGGGTTACAGAAAATCCTGACTTGGAGGCTGGCAGTTCAGTTACTGGAACGATTGATGCAAAATTTGAGAGCGGATATTTAATTACGGTGAATGTGGGTTCTGAAACACTGCAGGGTGTCCTGTACCATACTCCTACAGGGTCGCACATGTCCCAGAGTTCTAATAATCCTATTGCTGCTCCACCTCATCAACGAAAACGGAAGAGACACCAGCTGGCATTAAGGGATTCGTCTCGACCCAAGGCCAACAGGAATGGTTATAATTTCTTCTTTGCTGAACAATATGCCAAGCTTAAACCTTTGTACCATGGGCAAGAGAAGGCCATCAGCAATAAAATTGTACTTCTGTGGAGCAGACTCACTGAGGATGAAAAACGGGTACTGTGGGCTGAATTTATTGGTTTTCTTCTTGTGCTGCTTATATGA

Network for GWHGAAZE027368

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.22	ARID	44	158	3.00E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.470
	SRR3591706	second leaf	7.905
	SRR3591707	mature leaf	12.549
	SRR3591708	Shoot apex	17.423
	SRR3591709	Stem	24.056
	SRR3591710	White floral bud	14.133
	SRR3591711	White flower	17.796
	SRR3591712	Green floral bud	19.509
	SRR3591713	Yellow flower	14.565
SRP173429	SRR8316895	Juvenile bud stage	9.929
	SRR8316896	Juvenile bud stage	14.819
	SRR8316897	Juvenile bud stage	7.800
	SRR8316894	Third green stage	5.556
	SRR8316900	Third green stage	16.968
	SRR8316901	Third green stage	16.629
	SRR8316898	Complete white stage	6.132
	SRR8316899	Complete white stage	22.048
	SRR8316903	Complete white stage	8.790
	SRR8316902	Silver flowering stage	6.047
	SRR8316904	Silver flowering stage	6.763
	SRR8316905	Silver flowering stage	3.248
	SRR8316906	Gold flowering stage	9.674
	SRR8316907	Gold flowering stage	10.611
	SRR8316908	Gold flowering stage	12.143
SRP132670	SRR6706286	Control	11.086
	SRR6706287	Light intensity 50%	11.527
	SRR6706288	Light intensity 20%	15.049
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.094
	CNS0095593	Slightly white alabastrum(diploid) 2	11.246
	CNS0095594	Slightly white alabastrum(diploid) 3	10.260
	CNS0095595	Whole white alabastrum(diploid) 2	8.476
	CNS0095596	Whole white alabastrum(diploid) 3	11.161
	CNS0095597	Whole white alabastrum(diploid) 4	9.421
	CNS0095598	Silvery flower (diploied) 1	14.937
	CNS0095599	Silvery flower (diploied) 2	11.619
	CNS0095600	Silvery flower (diploied) 3	12.616
	CNS0095601	Golden flower (diploid) 1	10.555
	CNS0095602	Golden flower (diploid) 2	15.437
	CNS0095603	Golden flower (diploid) 3	13.160
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.656
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.696
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.790
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.157
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.115
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.228
	CNS0095610	Silvery flower (tetraploid) 1	14.466
	CNS0095611	Silvery flower (tetraploid) 2	16.145
	CNS0095612	Silvery flower (tetraploid) 3	10.270
	CNS0095613	Golden flower (tetraploid) 1	9.169
	CNS0095614	Golden flower (tetraploid) 2	14.055
	CNS0095615	Golden flower (tetraploid) 3	9.377
CRA001975	CRR073297	Stem 1	13.642
	CRR073298	Stem 2	10.595
	CRR073299	Stem 3	14.329
	CRR073300	Leaf 1	13.067
	CRR073301	Leaf 2	10.019
	CRR073302	Leaf 3	11.705
	CRR073303	Juvenile bud 1	13.998
	CRR073304	Juvenile bud 2	8.858
	CRR073305	Juvenile bud 3	14.673
	CRR073306	Third green 1	2.374
	CRR073307	Third green 2	2.614
	CRR073308	Third green 3	3.698
	CRR073309	Second white 1	4.568
	CRR073310	Second white 2	2.272
	CRR073311	Second white 3	3.152
	CRR073312	Silver flowering 1	3.721
	CRR073313	Silver flowering 2	4.227
	CRR073314	Silver flowering 3	1.403
	CRR073315	Gold flowering 1	11.151
	CRR073316	Gold flowering 2	11.653
	CRR073317	Gold flowering 3	9.090
	CRR073318	Tawny withering 1	20.419
	CRR073319	Tawny withering 2	17.481
	CRR073320	Tawny withering 3	26.438