Gene detail

Detail information of GWHGAAZE027353

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006452707.1	0	hypothetical protein CICLE_v10008898mg [Citrus clementina]
Swissprot	tr\|Q680K8\|Y1576_ARATH	0	BTB/POZ domain-containing protein At1g55760
trEMBL	tr\|A0A067G340\|A0A067G340_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO74054.1}
TAIR10	AT1G55760.1	5E-144	BTB/POZ domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	18155390	18157708	+
GWHAAZE00000008	mRNA	18155390	18157708	+
GWHAAZE00000008	exon	18155390	18155625	+
GWHAAZE00000008	exon	18156030	18156175	+
GWHAAZE00000008	exon	18156496	18156614	+
GWHAAZE00000008	exon	18157103	18157708	+
GWHAAZE00000008	CDS	18155390	18155625	+
GWHAAZE00000008	CDS	18156030	18156175	+
GWHAAZE00000008	CDS	18156496	18156614	+
GWHAAZE00000008	CDS	18157103	18157708	+

Transcript Sequence
>GWHTAAZE027387 GAAGAGAGAGAAAAGGGAAAGCTGGGGAAGACAGGGGAAGTGTGGTTGGAGGGACTATTCGACTGCATCCATGAAATCACGGCCGCACTCGCCTTCGCTAGGATGACCGACTCCGCTTACCGGGTCGATACCACGTCTCGCCTCGCTCAATGGCGGATCGACAATTTGTCCTCTTCTTCTTCTTCTTCTTCTACTTACCGCAAATCCGATCCTTTCAAAATCGGAAAGTGGAACTGGCATTTAGCTGTGGAGAAGAACCGGGGTATGTTCATTAGATTGTACCCGGAGATTTCGAAATTAACGAAAGACAATCCTCCAATTGCATCATTTATCATTCGAGTGGTATCTTTAGTGGGAGATCGAAAGACTTTGGCTCACCCGGAAATCACTGATAAGCATCTCAAGAACAACGAAGATTTTGTTTGGGCACTTGAGGTTCCATTGACTGGAAAATTCATCATTGACGTTGAATTTCTTGATCTCAAGACTGCACCTCCTGACGGTGGAGAGGCTTGCTCCATTTGGGCAGAAGGGCTTACGCAAAAAGACTCGAATACAACAGCCCTTGCATGCCTCGGACGAATGTTATCAGAAAGCATTCACATGGACATTTCAATCAATCTCTCTGATGGAACAAGCATAGGAGCTCATCGTGCAGTGCTAGCTGCACGTTCCCCTGTTTTCCGAAGCATGTTCTTACATGACCTTAAAGAGAAAGAGCTATCCACCATAAACATAACCGACATGTCAATAGAAGCTTGTCAAGCCTTTCTCAATTACATTTACGGCAACATTCAACACCAACAATTTCTAACTCACAGGCTGGCTCTTCTTCGAGCCGCTGATAAGTACGATATCTTGGACTTGAAAGAGGCTTGCCACAATAGTCTGCTAGAGGACATTGATGCCAGGAACGTGCTTGAGAGGCTCCAAAACGCATATTTGTACCAATTGCCGAAGCTGAAGATGAGCTGTATGCAGTATCTTGTGAAGTTTGGTAAGATATTTGACATTAGAGATGATTTCAATGCATTTATGCAGTGTGCAGACAGGGAACTTATAGCTGATATCTTCCATGAAGTTCTTGCAGCATGGAAAGGTCTTTGA

Network for GWHGAAZE027353

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.32	BTB	196	299	3.40E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	3-box

KEGG pathway

KO	Enzyme	pathway	mapID
K10523	SPOP	Hedgehog signaling pathway	map04340
K10523	SPOP	Hedgehog signaling pathway - fly	map04341

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.661
	SRR3591706	second leaf	23.673
	SRR3591707	mature leaf	42.425
	SRR3591708	Shoot apex	14.356
	SRR3591709	Stem	99.819
	SRR3591710	White floral bud	6.927
	SRR3591711	White flower	11.658
	SRR3591712	Green floral bud	9.683
	SRR3591713	Yellow flower	4.427
SRP173429	SRR8316895	Juvenile bud stage	2.537
	SRR8316896	Juvenile bud stage	11.243
	SRR8316897	Juvenile bud stage	3.276
	SRR8316894	Third green stage	7.709
	SRR8316900	Third green stage	6.778
	SRR8316901	Third green stage	8.479
	SRR8316898	Complete white stage	1.297
	SRR8316899	Complete white stage	8.386
	SRR8316903	Complete white stage	1.835
	SRR8316902	Silver flowering stage	1.181
	SRR8316904	Silver flowering stage	0.703
	SRR8316905	Silver flowering stage	0.186
	SRR8316906	Gold flowering stage	1.117
	SRR8316907	Gold flowering stage	2.740
	SRR8316908	Gold flowering stage	6.313
SRP132670	SRR6706286	Control	10.149
	SRR6706287	Light intensity 50%	10.112
	SRR6706288	Light intensity 20%	7.329
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.999
	CNS0095593	Slightly white alabastrum(diploid) 2	6.125
	CNS0095594	Slightly white alabastrum(diploid) 3	9.662
	CNS0095595	Whole white alabastrum(diploid) 2	3.056
	CNS0095596	Whole white alabastrum(diploid) 3	3.954
	CNS0095597	Whole white alabastrum(diploid) 4	2.947
	CNS0095598	Silvery flower (diploied) 1	2.463
	CNS0095599	Silvery flower (diploied) 2	1.774
	CNS0095600	Silvery flower (diploied) 3	1.470
	CNS0095601	Golden flower (diploid) 1	1.959
	CNS0095602	Golden flower (diploid) 2	2.279
	CNS0095603	Golden flower (diploid) 3	1.679
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.466
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.765
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.744
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.424
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.764
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.244
	CNS0095610	Silvery flower (tetraploid) 1	3.330
	CNS0095611	Silvery flower (tetraploid) 2	3.684
	CNS0095612	Silvery flower (tetraploid) 3	1.175
	CNS0095613	Golden flower (tetraploid) 1	2.951
	CNS0095614	Golden flower (tetraploid) 2	4.264
	CNS0095615	Golden flower (tetraploid) 3	2.139
CRA001975	CRR073297	Stem 1	18.346
	CRR073298	Stem 2	28.664
	CRR073299	Stem 3	19.991
	CRR073300	Leaf 1	6.481
	CRR073301	Leaf 2	5.684
	CRR073302	Leaf 3	3.994
	CRR073303	Juvenile bud 1	4.056
	CRR073304	Juvenile bud 2	1.709
	CRR073305	Juvenile bud 3	3.171
	CRR073306	Third green 1	0.096
	CRR073307	Third green 2	0.370
	CRR073308	Third green 3	0.674
	CRR073309	Second white 1	0.219
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.089
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.078
	CRR073314	Silver flowering 3	0.274
	CRR073315	Gold flowering 1	5.815
	CRR073316	Gold flowering 2	7.667
	CRR073317	Gold flowering 3	5.185
	CRR073318	Tawny withering 1	56.543
	CRR073319	Tawny withering 2	55.168
	CRR073320	Tawny withering 3	48.953