Detail information of GWHGAAZE027343


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002266700.10PREDICTED: serine/threonine-protein kinase D6PK-like [Vitis vinifera]
COGYP_593464.14E-18serine/threonine protein kinase
Swissprottr|Q39183|D6KL2_ARATH0Serine/threonine-protein kinase D6PKL2
trEMBLtr|F6I571|F6I571_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB62026.1}
TAIR10AT5G47750.10D6 protein kinase like 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1801015618014222-
GWHAAZE00000008mRNA1801015618014222-
GWHAAZE00000008exon1801015618011244-
GWHAAZE00000008exon1801325818014222-
GWHAAZE00000008CDS1801325818014222-
GWHAAZE00000008CDS1801036218011244-
GWHAAZE00000008three_prime_UTR1801015618010361-
Transcript Sequence

Network for GWHGAAZE027343

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase2213747.90E-37
PF00069.26Pkinase4545572.00E-20
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyAGC_RSK-2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf66.532
SRR3591706second leaf43.652
SRR3591707mature leaf60.268
SRR3591708Shoot apex57.080
SRR3591709Stem93.928
SRR3591710White floral bud62.652
SRR3591711White flower66.705
SRR3591712Green floral bud70.091
SRR3591713Yellow flower50.913
SRP173429 SRR8316895Juvenile bud stage 32.878
SRR8316896Juvenile bud stage 38.890
SRR8316897Juvenile bud stage 19.554
SRR8316894Third green stage 20.417
SRR8316900Third green stage 61.995
SRR8316901Third green stage 61.368
SRR8316898Complete white stage 28.561
SRR8316899Complete white stage 112.716
SRR8316903Complete white stage 42.097
SRR8316902Silver flowering stage22.173
SRR8316904Silver flowering stage31.547
SRR8316905Silver flowering stage16.675
SRR8316906Gold flowering stage 52.496
SRR8316907Gold flowering stage 48.433
SRR8316908Gold flowering stage 54.974
SRP132670SRR6706286Control77.604
SRR6706287Light intensity 50%86.349
SRR6706288Light intensity 20%95.834
CNP0000432CNS0095592Slightly white alabastrum(diploid) 140.815
CNS0095593Slightly white alabastrum(diploid) 247.160
CNS0095594Slightly white alabastrum(diploid) 332.780
CNS0095595Whole white alabastrum(diploid) 235.977
CNS0095596Whole white alabastrum(diploid) 328.222
CNS0095597Whole white alabastrum(diploid) 433.369
CNS0095598Silvery flower (diploied) 137.740
CNS0095599Silvery flower (diploied) 235.077
CNS0095600Silvery flower (diploied) 370.142
CNS0095601Golden flower (diploid) 136.092
CNS0095602Golden flower (diploid) 263.792
CNS0095603Golden flower (diploid) 362.794
CNS0095604Slightly white alabastrum(tetraploid) 158.286
CNS0095605Slightly white alabastrum(tetraploid) 241.362
CNS0095606Slightly white alabastrum(tetraploid) 3128.453
CNS0095607Whole white alabastrum(tetraploid) 132.559
CNS0095608Whole white alabastrum(tetraploid) 229.237
CNS0095609Whole white alabastrum(tetraploid) 377.044
CNS0095610Silvery flower (tetraploid) 162.413
CNS0095611Silvery flower (tetraploid) 260.160
CNS0095612Silvery flower (tetraploid) 368.531
CNS0095613Golden flower (tetraploid) 146.356
CNS0095614Golden flower (tetraploid) 260.026
CNS0095615Golden flower (tetraploid) 372.701
CRA001975CRR073297Stem 179.799
CRR073298Stem 275.541
CRR073299Stem 385.616
CRR073300Leaf 1126.749
CRR073301Leaf 2115.677
CRR073302Leaf 3103.687
CRR073303Juvenile bud 1129.757
CRR073304Juvenile bud 2146.373
CRR073305Juvenile bud 3197.981
CRR073306Third green 1121.638
CRR073307Third green 2111.951
CRR073308Third green 3109.756
CRR073309Second white 1101.843
CRR073310Second white 284.992
CRR073311Second white 382.018
CRR073312Silver flowering 158.549
CRR073313Silver flowering 255.418
CRR073314Silver flowering 341.055
CRR073315Gold flowering 149.923
CRR073316Gold flowering 259.491
CRR073317Gold flowering 346.991
CRR073318Tawny withering 179.280
CRR073319Tawny withering 269.795
CRR073320Tawny withering 384.681