Gene detail

Detail information of GWHGAAZE027338

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI39747.3	0	unnamed protein product [Vitis vinifera]
COG	YP_004571825.1	9E-23	serine/threonine protein kinase
Swissprot	tr\|Q9FHG4\|LRKS7_ARATH	0	Probable L-type lectin-domain containing receptor kinase S.7 (Precursor)
trEMBL	tr\|M5W756\|M5W756_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ09529.1}
TAIR10	AT5G55830.1	0	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	17917328	17924363	+
GWHAAZE00000008	mRNA	17917328	17924363	+
GWHAAZE00000008	exon	17917328	17919240	+
GWHAAZE00000008	exon	17923316	17923422	+
GWHAAZE00000008	exon	17923500	17923705	+
GWHAAZE00000008	exon	17924241	17924363	+
GWHAAZE00000008	CDS	17917328	17919240	+
GWHAAZE00000008	CDS	17923316	17923422	+
GWHAAZE00000008	CDS	17923500	17923705	+
GWHAAZE00000008	CDS	17924241	17924363	+

Transcript Sequence
>GWHTAAZE027372 ATGCATCCAATCAACATTCTTGCTCTCTTCTTCTCCTTTCTCCTCAATTTCACATACCCATCACTATTATCTGCACAAAATTTGAATTTCAACTTCGATTTCTCTTCTTTGACTCTCCGTAACCTCACCCTCCTCGGCGATTCTCACCTCCGCAATGGCGTAATTGGACTTACCCGAGAGTCCGGTGTACCCACCTCCAGCTCCGGCACACTCATATACAACTCCCCAATTCCTTTCTTTGACCCACAATCCAATACAACTACTTCTTTCTCCACAAATTTCACTTTTTCTATCAGAGATGTCAATCCTACGTCGTTTGGGGATGGATTGGCCTTCTTTCTATCATCCAACAACGAGACACTTGGTAGCTCCGGTGGGTATTTGGGCCTTGTGAATTCTTCTCAATTGACTAAGAACAAGTTTCTGGCAATTGAATTTGATACTCGGGTCGACTTGCATTTTGATGACCCGAACGAGAACCACGTTGGGTTGGATATTGACAGCCTCAATTCCATCAAAACTGCTGATGCTAGGTTGATTGGTATTGAGCTTAAAAGTGGGGATTCAATTACGGCTTCGATTGATTATGAGAATGAGGAAAAAAAATTGAAAGTTTTCTTGAGCTACAATAACTCCAAGCCTGAAGAGCCACTACTTGTGGTCGATATTGATCTATCTGATTATCTCAAGGAGTTTAAGTATGTGGGTTTTTCTGCATCGACTGAGGGAAGCACAGAGGTCCACTTTATCCAGAATTGGAGCTTTCAAACTTTTGGGTTCCCCTCGGAGAATCCAAAAATTAATCATAACAATGCATCAGATAATTCTATGACCACAAGACCCTCCATTCCGGATTCTGACACTACCAATGTACATCACAAGAGGCTCGGTTTAGCTCTTGGGATTGCTGGTCCGAGCTTTTTTTTGGTTGTCCTTGTGGTTTTCAGCTTCACTTCGGTTAAGAAATGGAGGGGGATGAGATCAGCGAGGAGCTTTAGAGGAGATGTTATGAATAGGCCAAGGCAATTCAGTTACAAAGAGCTTAAATCTGCCACAAAAGGGTTTCACTCCAGCAGGATTATAGGTCACGGAGCATTTGGGACCGTGTACAAGGCCTATTTAATGAATACTGGTACACTTTCAGCTGTGAAAAGATCGAAGCATTCCCACGAAGGCAAAACCGAATTCCTAGCCGAATTGTCAATCATAGCTTGTTTGAGGCACAAAAACTTAGTTCAGCTCCAAGGTTGGTGCATCGAAAAAGGCGAACTACTGCTTGTGTACGAGTTCATGGCCAATGGGAGCCTTGATAAGGTCCTATACATAGAAAATGAACAAGGTAGCCCTCTAAAATGGCACCACAGATACAACATTGCAGTTGGTTTAGCCTCTGTTCTAACCTATCTACATCAAGAATGTGAGCAGCAAGTGATTCATAGAGACATAAAGGCCGGTAACATCATGCTAGATTCAAACTTTAACCCGAGGCTAGGAGATTTTGGACTTGCTAGGCTCATGGATCATGATAAGAGTCCCGTTTCAACGCTAACCGCTGGAACAATGGGTTACCTTGCCCCGGAGTACCTTCAGTACGGTAAAGCAACCGAAAAAACGGATGTTTTTAGTTATGGTGTGGTCATACTCGAAATGGCTTGTGGAAGGAGGCCAATTGAGAGAGAAGAAGGTGGTCAGAAAATGGTGAATTTGGTTGATTGGGTTTGGGGGTTGCATTCTCAAGGAAAGATTGTCGAAGCAGCAGATAAAAGCTTGAATGGGGAGTTCAAAGAGGAGGAAATTAGGAAGCTTTTGCTAATGGGCTTGAGCTGTGCTAATCCTGATTCTGCAGAGAGGCCTTCAATGAGGGGGTGTTGCAGATTCTTAATAATCAGGCTCAGCCTATGGCTGTGCCAAAGTTTCAAGAAGGTGGTGATAGAGGTTGGGTTAAACCCACCTGCAATGGGACTCAAAACATTTAACGAATGGGCCACCGGTAACAGATTCCATATCGGCGATGCACTCTATTTCAAGCATGAGAGGGACTCGGTGCTGGTAGTGAACTCCCATGATTACCAAGAGTGCATCACATCGAACCCGATCTCCAGATTTGATGATGGGAGCACTCTTTTTCTATTTGACCGTTCTGGGCTTTTCTACTTCATCAGCGGGGAGCAGGGCCACTGTGAATCCGGCTCGAAACTGATTATTCGAGTAATTAAACATTCCGAAAATCTGCACCGCCACCCGAAGACGGCAGATGGGATAGCCAAGATTCTGCTTGGTTCTGCCACTGAACCGTCTGTTGCATCTTATTTCATTGCTGCTCTTGGAGGGACATTGACATTTATATGA

Network for GWHGAAZE027338

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	31	262	2.00E-62
PF00069.26	Pkinase	355	624	3.40E-51
PF02298.18	Cu_bind_like	657	730	5.80E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0009055	molecular_function	electron transfer activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.345
	SRR3591706	second leaf	1.805
	SRR3591707	mature leaf	0.258
	SRR3591708	Shoot apex	5.458
	SRR3591709	Stem	1.967
	SRR3591710	White floral bud	0.681
	SRR3591711	White flower	0.929
	SRR3591712	Green floral bud	0.371
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.772
	SRR8316896	Juvenile bud stage	0.564
	SRR8316897	Juvenile bud stage	0.074
	SRR8316894	Third green stage	0.196
	SRR8316900	Third green stage	0.163
	SRR8316901	Third green stage	0.279
	SRR8316898	Complete white stage	0.103
	SRR8316899	Complete white stage	0.244
	SRR8316903	Complete white stage	0.318
	SRR8316902	Silver flowering stage	0.123
	SRR8316904	Silver flowering stage	0.240
	SRR8316905	Silver flowering stage	0.019
	SRR8316906	Gold flowering stage	0.261
	SRR8316907	Gold flowering stage	0.383
	SRR8316908	Gold flowering stage	0.085
SRP132670	SRR6706286	Control	0.370
	SRR6706287	Light intensity 50%	0.293
	SRR6706288	Light intensity 20%	0.362
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.755
	CNS0095593	Slightly white alabastrum(diploid) 2	0.350
	CNS0095594	Slightly white alabastrum(diploid) 3	0.572
	CNS0095595	Whole white alabastrum(diploid) 2	0.126
	CNS0095596	Whole white alabastrum(diploid) 3	0.033
	CNS0095597	Whole white alabastrum(diploid) 4	0.062
	CNS0095598	Silvery flower (diploied) 1	0.270
	CNS0095599	Silvery flower (diploied) 2	0.367
	CNS0095600	Silvery flower (diploied) 3	0.209
	CNS0095601	Golden flower (diploid) 1	0.077
	CNS0095602	Golden flower (diploid) 2	0.086
	CNS0095603	Golden flower (diploid) 3	0.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.430
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.406
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.671
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.080
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.062
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.047
	CNS0095610	Silvery flower (tetraploid) 1	0.144
	CNS0095611	Silvery flower (tetraploid) 2	0.034
	CNS0095612	Silvery flower (tetraploid) 3	0.034
	CNS0095613	Golden flower (tetraploid) 1	0.286
	CNS0095614	Golden flower (tetraploid) 2	0.046
	CNS0095615	Golden flower (tetraploid) 3	0.014
CRA001975	CRR073297	Stem 1	1.024
	CRR073298	Stem 2	0.693
	CRR073299	Stem 3	1.020
	CRR073300	Leaf 1	0.492
	CRR073301	Leaf 2	0.222
	CRR073302	Leaf 3	0.307
	CRR073303	Juvenile bud 1	0.403
	CRR073304	Juvenile bud 2	0.146
	CRR073305	Juvenile bud 3	0.168
	CRR073306	Third green 1	0.017
	CRR073307	Third green 2	0.036
	CRR073308	Third green 3	0.158
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.050
	CRR073314	Silver flowering 3	0.194
	CRR073315	Gold flowering 1	0.178
	CRR073316	Gold flowering 2	0.058
	CRR073317	Gold flowering 3	0.386
	CRR073318	Tawny withering 1	1.172
	CRR073319	Tawny withering 2	1.304
	CRR073320	Tawny withering 3	1.902