Gene detail

Detail information of GWHGAAZE027330

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266459.1	0	PREDICTED: cysteine synthase 2 isoform X1 [Vitis vinifera]
COG	YP_007102480.1	2E-112	cysteine synthase
Swissprot	tr\|Q9SXS7\|CYSD2_ARATH	6E-38	Bifunctional L-3-cyanoalanine synthase/cysteine synthase D2
trEMBL	tr\|D7UAG1\|D7UAG1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39726.3}
TAIR10	AT1G55880.1	4E-174	Pyridoxal-5'-phosphate-dependent enzyme family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	17825861	17830066	+
GWHAAZE00000008	mRNA	17825861	17830066	+
GWHAAZE00000008	exon	17825861	17826160	+
GWHAAZE00000008	exon	17826289	17826363	+
GWHAAZE00000008	exon	17828400	17828543	+
GWHAAZE00000008	exon	17828689	17829078	+
GWHAAZE00000008	exon	17829166	17829401	+
GWHAAZE00000008	exon	17829844	17830066	+
GWHAAZE00000008	CDS	17825861	17826160	+
GWHAAZE00000008	CDS	17826289	17826363	+
GWHAAZE00000008	CDS	17828400	17828543	+
GWHAAZE00000008	CDS	17828689	17829078	+
GWHAAZE00000008	CDS	17829166	17829401	+
GWHAAZE00000008	CDS	17829844	17830066	+

Transcript Sequence
>GWHTAAZE027364 GGGAACACTTGGATTCTAGTTCTGTACGTTGCACCGGTTGCACTGAAACTCGGCAAAGGGATGGGGCCTGCAAGTGTGAAAAGCACAGGCGCTATTGTAGCTGCCTTCTCCATAGCCACCGTCCTCTCTTATTACTACTTCTTCTTCAACAATAATAACTCTCCACCAAAGAGAAGAAAGACCCACAAATCCCCTATTATTAATTATAATAATAAACAACTCAAAAATGGACTCATTGAGGCAATTGGCAACACCCCTCTTATCAGAATCAACAGCCTCTCCGAAGCCACTGGTTGTGAAATTCTTGGGAAAGCAGAGTTCTTGAATCCAGGAGGCAGTGTTAAAGACAGGGTTGCCGTTAAAATTATCGAAGAGGCTCTTGAATCTGGACTTCTAGCTCCAGGTGGAGTAGTTACAGAGGGGAGTGCTGGAAGCACCGCTATTAGTCTTGCAACAGTGGCTCCTGCTTATGGATGCAAATGCCATGTGGTTATCCCAGATGATGTTGCTATTGAAAAATCTCAAATATTGGAGGCCCTTGGAGCTACCGTTGAGAGGGTTAGACCAGTGTCAATTACACACAGGGACCATTATGTCAATGTTGCGAGAAGAAGGGCATTGGAAGCAAACGAAGTGGCACTGAAACACAAAAAAACGGAGCAAACAGATGCCAAAGATGTAGAGCAAATCAATGGCTACACATCCAACGGTGAGGAACAAAGTACAGTATTTTCAAGTAACTGCAAAGGTGGTTACTTTGCAGATCAATTTGAGAATCTGGCAAATTTTAGGTCCCACTATGAGGGTACAGGGCCCGAGATATGGGAACAGACTGATGGCAAGTTGCACGCTTTCATTGCAGCCGCTGGCACAGGTGGCACTGTTGCCGGTGTTTCTCGGTTCCTAAAGGAAAAAGATTCAAACATCAAGTGTTTTCTTATTGATCCCCCTGGTTCTGGATTGTTCAACAAAGTAACTAGAGGGGTCATGTACACAAAAGAAGAGGCTGAAGGGCGGAGGCTGAAGAACCCCTTTGATACTATAACTGAAGGAATTGGAATTAATAGAGTAACCGAGAATTTTAAAATGGCTCAATTTGATGGGGCTTTCCAAGGCACTGATATGGAGGCTGTTGAAATGTCTAGGTTCCTTTTGAAGAATGACGGGCTGTTTGTTGGGAGTTCTTCGGCCATGAACTGCGTTGGAGCAGTCAGAGTGGCACAATCAATTGGGCCAGGTCACACTATTGTAACAGTCCTGTGTGACAATGGGATGAGGCATCTGAGCAAGTTTCACAATGCTCAATATCTGTCTCGGTATGGCTTGACTCCCTCAGCTACTGGATTGGAATTTCTCCAGGTTGACTGA

Network for GWHGAAZE027330

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	81	422	6.80E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01738	cysK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.650
	SRR3591706	second leaf	5.316
	SRR3591707	mature leaf	5.373
	SRR3591708	Shoot apex	8.784
	SRR3591709	Stem	6.512
	SRR3591710	White floral bud	7.211
	SRR3591711	White flower	30.446
	SRR3591712	Green floral bud	5.910
	SRR3591713	Yellow flower	152.589
SRP173429	SRR8316895	Juvenile bud stage	4.222
	SRR8316896	Juvenile bud stage	5.853
	SRR8316897	Juvenile bud stage	2.395
	SRR8316894	Third green stage	2.556
	SRR8316900	Third green stage	4.651
	SRR8316901	Third green stage	3.302
	SRR8316898	Complete white stage	1.518
	SRR8316899	Complete white stage	5.515
	SRR8316903	Complete white stage	3.053
	SRR8316902	Silver flowering stage	2.280
	SRR8316904	Silver flowering stage	2.928
	SRR8316905	Silver flowering stage	1.633
	SRR8316906	Gold flowering stage	6.893
	SRR8316907	Gold flowering stage	7.972
	SRR8316908	Gold flowering stage	20.866
SRP132670	SRR6706286	Control	6.307
	SRR6706287	Light intensity 50%	6.527
	SRR6706288	Light intensity 20%	6.443
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.606
	CNS0095593	Slightly white alabastrum(diploid) 2	5.299
	CNS0095594	Slightly white alabastrum(diploid) 3	6.305
	CNS0095595	Whole white alabastrum(diploid) 2	3.025
	CNS0095596	Whole white alabastrum(diploid) 3	2.656
	CNS0095597	Whole white alabastrum(diploid) 4	2.343
	CNS0095598	Silvery flower (diploied) 1	6.197
	CNS0095599	Silvery flower (diploied) 2	5.301
	CNS0095600	Silvery flower (diploied) 3	10.093
	CNS0095601	Golden flower (diploid) 1	7.824
	CNS0095602	Golden flower (diploid) 2	23.167
	CNS0095603	Golden flower (diploid) 3	21.706
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.363
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.779
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.187
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.429
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.431
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.027
	CNS0095610	Silvery flower (tetraploid) 1	22.386
	CNS0095611	Silvery flower (tetraploid) 2	16.419
	CNS0095612	Silvery flower (tetraploid) 3	12.391
	CNS0095613	Golden flower (tetraploid) 1	32.496
	CNS0095614	Golden flower (tetraploid) 2	30.150
	CNS0095615	Golden flower (tetraploid) 3	25.986
CRA001975	CRR073297	Stem 1	6.329
	CRR073298	Stem 2	6.353
	CRR073299	Stem 3	5.377
	CRR073300	Leaf 1	5.345
	CRR073301	Leaf 2	4.382
	CRR073302	Leaf 3	3.780
	CRR073303	Juvenile bud 1	3.092
	CRR073304	Juvenile bud 2	2.353
	CRR073305	Juvenile bud 3	3.400
	CRR073306	Third green 1	1.177
	CRR073307	Third green 2	0.913
	CRR073308	Third green 3	1.640
	CRR073309	Second white 1	3.782
	CRR073310	Second white 2	2.527
	CRR073311	Second white 3	3.298
	CRR073312	Silver flowering 1	4.868
	CRR073313	Silver flowering 2	3.493
	CRR073314	Silver flowering 3	3.456
	CRR073315	Gold flowering 1	2.441
	CRR073316	Gold flowering 2	3.488
	CRR073317	Gold flowering 3	3.082
	CRR073318	Tawny withering 1	5.041
	CRR073319	Tawny withering 2	4.786
	CRR073320	Tawny withering 3	3.980