Detail information of GWHGAAZE027312


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009762282.10PREDICTED: beta-(1,2)-xylosyltransferase [Nicotiana sylvestris]
COGYP_003404490.10.000002capsular polysaccharide biosynthesis protein-like protein
Swissprottr|Q9LDH0|XYLT_ARATH0Beta-(1,2)-xylosyltransferase
trEMBLtr|Q5F4N7|Q5F4N7_TOBAC0Putative beta-(1,2)-xylosyltransferase {ECO:0000313|EMBL:CAF25343.1}
TAIR10AT5G55500.10beta-1,2-xylosyltransferase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1754077217544174+
GWHAAZE00000008mRNA1754077217544174+
GWHAAZE00000008exon1754077217541476+
GWHAAZE00000008exon1754286517543014+
GWHAAZE00000008exon1754345517544174+
GWHAAZE00000008CDS1754077217541476+
GWHAAZE00000008CDS1754286517543014+
GWHAAZE00000008CDS1754345517544174+
Transcript Sequence

Network for GWHGAAZE027312

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04577.15DUF5632525004.80E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03714XYLT Metabolic pathways map01100
Various types of N-glycan biosynthesismap00513

Gene Ontology

GO term OntologyName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.441
SRR3591706second leaf2.766
SRR3591707mature leaf3.528
SRR3591708Shoot apex4.795
SRR3591709Stem5.059
SRR3591710White floral bud4.098
SRR3591711White flower6.247
SRR3591712Green floral bud3.854
SRR3591713Yellow flower4.737
SRP173429 SRR8316895Juvenile bud stage 2.547
SRR8316896Juvenile bud stage 2.869
SRR8316897Juvenile bud stage 0.569
SRR8316894Third green stage 1.875
SRR8316900Third green stage 4.222
SRR8316901Third green stage 4.380
SRR8316898Complete white stage 2.013
SRR8316899Complete white stage 7.687
SRR8316903Complete white stage 4.688
SRR8316902Silver flowering stage2.436
SRR8316904Silver flowering stage3.306
SRR8316905Silver flowering stage1.629
SRR8316906Gold flowering stage 5.770
SRR8316907Gold flowering stage 5.354
SRR8316908Gold flowering stage 4.951
SRP132670SRR6706286Control6.667
SRR6706287Light intensity 50%6.802
SRR6706288Light intensity 20%6.482
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.183
CNS0095593Slightly white alabastrum(diploid) 21.475
CNS0095594Slightly white alabastrum(diploid) 32.063
CNS0095595Whole white alabastrum(diploid) 21.475
CNS0095596Whole white alabastrum(diploid) 32.393
CNS0095597Whole white alabastrum(diploid) 41.840
CNS0095598Silvery flower (diploied) 15.146
CNS0095599Silvery flower (diploied) 22.192
CNS0095600Silvery flower (diploied) 36.193
CNS0095601Golden flower (diploid) 14.224
CNS0095602Golden flower (diploid) 26.066
CNS0095603Golden flower (diploid) 36.385
CNS0095604Slightly white alabastrum(tetraploid) 11.972
CNS0095605Slightly white alabastrum(tetraploid) 21.367
CNS0095606Slightly white alabastrum(tetraploid) 34.301
CNS0095607Whole white alabastrum(tetraploid) 11.349
CNS0095608Whole white alabastrum(tetraploid) 20.746
CNS0095609Whole white alabastrum(tetraploid) 32.532
CNS0095610Silvery flower (tetraploid) 13.804
CNS0095611Silvery flower (tetraploid) 22.661
CNS0095612Silvery flower (tetraploid) 33.520
CNS0095613Golden flower (tetraploid) 11.526
CNS0095614Golden flower (tetraploid) 23.204
CNS0095615Golden flower (tetraploid) 31.648
CRA001975CRR073297Stem 13.890
CRR073298Stem 23.567
CRR073299Stem 32.044
CRR073300Leaf 14.465
CRR073301Leaf 24.124
CRR073302Leaf 32.719
CRR073303Juvenile bud 13.241
CRR073304Juvenile bud 22.353
CRR073305Juvenile bud 35.495
CRR073306Third green 10.860
CRR073307Third green 20.825
CRR073308Third green 30.676
CRR073309Second white 11.088
CRR073310Second white 21.364
CRR073311Second white 31.454
CRR073312Silver flowering 10.755
CRR073313Silver flowering 21.135
CRR073314Silver flowering 30.488
CRR073315Gold flowering 15.076
CRR073316Gold flowering 25.702
CRR073317Gold flowering 33.535
CRR073318Tawny withering 14.124
CRR073319Tawny withering 24.862
CRR073320Tawny withering 33.816