Gene detail

Detail information of GWHGAAZE027304

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFC37491.1	0	FtsZ1 protein [Manihot esculenta]
COG	YP_723288.1	6E-120	cell division protein FtsZ
Swissprot	tr\|Q42545\|FTSZ1_ARATH	1E-180	Cell division protein FtsZ homolog 1, chloroplastic (Precursor)
trEMBL	tr\|H9AY28\|H9AY28_MANES	0	FtsZ1 protein {ECO:0000313\|EMBL:AFC37491.1}
TAIR10	AT5G55280.1	8E-143	homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	17391326	17395023	-
GWHAAZE00000008	mRNA	17391326	17395023	-
GWHAAZE00000008	exon	17391326	17391544	-
GWHAAZE00000008	exon	17392093	17392326	-
GWHAAZE00000008	exon	17393254	17393421	-
GWHAAZE00000008	exon	17393683	17393933	-
GWHAAZE00000008	exon	17394290	17394389	-
GWHAAZE00000008	exon	17395021	17395023	-
GWHAAZE00000008	CDS	17395021	17395023	-
GWHAAZE00000008	CDS	17394290	17394389	-
GWHAAZE00000008	CDS	17393683	17393933	-
GWHAAZE00000008	CDS	17393254	17393421	-
GWHAAZE00000008	CDS	17392093	17392326	-
GWHAAZE00000008	CDS	17391326	17391544	-

Transcript Sequence
>GWHTAAZE027338 ATGGGTGTTGATTTCTTCACCATAAACACAGATGCTCAGGCACTCTTACAATCTGCTGCAAAACACCAGATTCAAATTGGAGAGCTTTTGACTCGTGGACTTGGTGCGGGTGGAAATCCACTTCTGGGGGAACAGGCGGCAGAGGAATCAAAGGAAGCCATTGCAAATGCTCTAAAAGGCTCAGATCTTGTGTTTATAACAGCAGGAATGGGTGGGGGTACAGGGTCTGGTGCTGCCCCGGTAGTTGCACAATTATCGAAGGAAGCAGGATATTTGACTGTTGGTGTGGTTACCTATCCATTCAGCTTTGAAGGACGTAAAAGATCCCTGCAGGCAGGGGCCATTTTTTTTACTGCACTGGAAGCTATTGAAAAGTTGCAAAAGAATGTTGATACTCTTATAGTGATTCCCAATGACCGTTTGTTGGATATGGCTGATGACAAGACACCTCTTCAGGATGCTTTCCTTCTTGCTGATGATGTACTACGCCAGGGGGTCCAAGGAATTTCAGATATAATCACAATACCTGGGTTGGTTAATGTAGATTTTGCAGATGTGAAGGCAGTCATGGAGGACTCTGGGACCGCAATGCTTGGAGTGGGCATTTCCTCGAGCAAGAACCGTGCTGAAGAAGCAGCAGAACAAGCAACTCTAGCTCCTTTAATTGGCTCTTCAATCCAATCTGCTACTGGGGTAGTTTATAACATTACTGGAGGAAAGGACATAACATTGCAAGAAGTGAACACAGTGTCTCAGGTTGTAACAAGTTTGGCGGATCCCTCGGCAAACATTATATTTGGGGCGGTAGTTGATGAGCGTTACAATGGGGAGATACAGGTGACCATAATTGCTACTGGTTTTGCTCACTCCTTTCAGAAAACTCTTCTGTCTCATCCTATGGGAGCAAAGCTGCCTGAAACACCCTCCACATCTCCCAATTCATCCCCTTCAGCTCCACGAAGGCTCTTCTTCTAA

Network for GWHGAAZE027304

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00091.26	Tubulin	7	145	1.50E-32
PF12327.9	FtsZ_C	194	287	7.90E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03531	ftsZ	Cell cycle - Caulobacter	map04112

Gene Ontology

GO term	Ontology	Name
GO:0007017	biological_process	microtubule-based process
GO:0005874	cellular_component	microtubule
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.393
	SRR3591706	second leaf	39.442
	SRR3591707	mature leaf	16.018
	SRR3591708	Shoot apex	35.948
	SRR3591709	Stem	11.198
	SRR3591710	White floral bud	17.792
	SRR3591711	White flower	7.880
	SRR3591712	Green floral bud	42.593
	SRR3591713	Yellow flower	3.504
SRP173429	SRR8316895	Juvenile bud stage	25.273
	SRR8316896	Juvenile bud stage	34.566
	SRR8316897	Juvenile bud stage	17.993
	SRR8316894	Third green stage	14.587
	SRR8316900	Third green stage	54.595
	SRR8316901	Third green stage	48.219
	SRR8316898	Complete white stage	5.673
	SRR8316899	Complete white stage	21.831
	SRR8316903	Complete white stage	8.907
	SRR8316902	Silver flowering stage	6.361
	SRR8316904	Silver flowering stage	7.275
	SRR8316905	Silver flowering stage	3.619
	SRR8316906	Gold flowering stage	6.956
	SRR8316907	Gold flowering stage	7.869
	SRR8316908	Gold flowering stage	6.947
SRP132670	SRR6706286	Control	45.382
	SRR6706287	Light intensity 50%	46.404
	SRR6706288	Light intensity 20%	56.088
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.723
	CNS0095593	Slightly white alabastrum(diploid) 2	31.305
	CNS0095594	Slightly white alabastrum(diploid) 3	31.438
	CNS0095595	Whole white alabastrum(diploid) 2	44.161
	CNS0095596	Whole white alabastrum(diploid) 3	51.201
	CNS0095597	Whole white alabastrum(diploid) 4	38.625
	CNS0095598	Silvery flower (diploied) 1	15.337
	CNS0095599	Silvery flower (diploied) 2	19.329
	CNS0095600	Silvery flower (diploied) 3	10.652
	CNS0095601	Golden flower (diploid) 1	13.919
	CNS0095602	Golden flower (diploid) 2	8.183
	CNS0095603	Golden flower (diploid) 3	7.577
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.353
	CNS0095605	Slightly white alabastrum(tetraploid) 2	56.621
	CNS0095606	Slightly white alabastrum(tetraploid) 3	66.751
	CNS0095607	Whole white alabastrum(tetraploid) 1	55.372
	CNS0095608	Whole white alabastrum(tetraploid) 2	58.711
	CNS0095609	Whole white alabastrum(tetraploid) 3	73.721
	CNS0095610	Silvery flower (tetraploid) 1	19.741
	CNS0095611	Silvery flower (tetraploid) 2	15.767
	CNS0095612	Silvery flower (tetraploid) 3	20.070
	CNS0095613	Golden flower (tetraploid) 1	10.538
	CNS0095614	Golden flower (tetraploid) 2	13.804
	CNS0095615	Golden flower (tetraploid) 3	4.617
CRA001975	CRR073297	Stem 1	47.369
	CRR073298	Stem 2	39.730
	CRR073299	Stem 3	41.733
	CRR073300	Leaf 1	41.783
	CRR073301	Leaf 2	43.230
	CRR073302	Leaf 3	42.055
	CRR073303	Juvenile bud 1	31.720
	CRR073304	Juvenile bud 2	26.306
	CRR073305	Juvenile bud 3	27.946
	CRR073306	Third green 1	14.699
	CRR073307	Third green 2	10.049
	CRR073308	Third green 3	9.946
	CRR073309	Second white 1	5.164
	CRR073310	Second white 2	4.421
	CRR073311	Second white 3	2.831
	CRR073312	Silver flowering 1	2.425
	CRR073313	Silver flowering 2	2.988
	CRR073314	Silver flowering 3	2.834
	CRR073315	Gold flowering 1	17.823
	CRR073316	Gold flowering 2	26.623
	CRR073317	Gold flowering 3	16.219
	CRR073318	Tawny withering 1	14.239
	CRR073319	Tawny withering 2	11.343
	CRR073320	Tawny withering 3	15.180