Gene detail

Detail information of GWHGAAZE027299

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010270090.1	2.204E-102	PREDICTED: vacuolar protein sorting-associated protein VTA1 homolog isoform X1 [Nelumbo nucifera]
Swissprot	tr\|Q9SZ15\|LIP5_ARATH	2E-79	Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 {ECO:0000303\|PubMed:17468262}
trEMBL	tr\|F6HET5\|F6HET5_VITVI	3E-95	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50697.1}
TAIR10	AT4G26750.1	2E-66	hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	17327665	17331078	+
GWHAAZE00000008	mRNA	17327665	17331078	+
GWHAAZE00000008	exon	17327665	17327743	+
GWHAAZE00000008	exon	17327833	17327924	+
GWHAAZE00000008	exon	17328779	17328888	+
GWHAAZE00000008	exon	17329060	17329135	+
GWHAAZE00000008	exon	17329297	17329428	+
GWHAAZE00000008	exon	17329579	17329656	+
GWHAAZE00000008	exon	17330839	17331078	+
GWHAAZE00000008	CDS	17327665	17327743	+
GWHAAZE00000008	CDS	17327833	17327924	+
GWHAAZE00000008	CDS	17328779	17328888	+
GWHAAZE00000008	CDS	17329060	17329135	+
GWHAAZE00000008	CDS	17329297	17329428	+
GWHAAZE00000008	CDS	17329579	17329656	+
GWHAAZE00000008	CDS	17330839	17331078	+

Transcript Sequence
>GWHTAAZE027333 ATGGCGGCGAAGGAGCTGCTCCCGTACTTACAAAGAGCCGATGAGTTGCAGAAACACCAACCCCTCGTCTCCTACTACTGTCGGTTGTATGCGATGGAACGAGGCTTGAAGATTCCTCAGAGCGAGCGTTCCAATGCCCTCCTTGTTTCCCTTATCAAACAGCTTGAAAAGGATAAGATGTCGTTGAAGTTGGGGACTGATGACAATCTGCACCTGGAGGGATTTGCATCACGTATCTTTGCAAAGGCGGACAATCAAGATTGGGCTGGACGAGCAGATTTGAGTACCGCAAAGACTTTTTATGCTGCCAGCATTTTCTTTGAAATTATTAATCAATTTGGTGAACTTCAACCTGATCTTGAGCAGAAGCAGAAATATGCAGCATGGAAAGCTGCAGATATAAGAAAAGCTTTGAAAGAAGGAAGGAAGCCTGTACCGGGTCCCCCTGTTGGTATTAAAGATCCATCAACTACTAAAAGTACTGAATACGACTGGCAAACTAGCAGGACAGATCTGGATATCAGACCTGCACCAGAATCTGATGGATCACCCCAGCCGTACACTGAAGGATTCAGCGCATCTTCAAGCAGAAGAAATGGGATTGTTTTAGAAGCTGTGCCAACTTCTTCTGCACAACCATGTGAATATGACAACAATTACCAGCCGCTGCCAGAGAAAATTGCTGAGGCACACAAGGCAGCTAGGTTTGCAGTTGGGGCATTGGCATTTGATGATGTTTCCATTGCTGTAGACTACCTTAGAAAATCGCTTGAACTATTGACGAATCCATCAGCAGCAGGTAAGTAA

Network for GWHGAAZE027299

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04652.17	Vta1	7	140	4.20E-40
PF18097.2	Vta1_C	224	261	4.50E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12199	VTA1, LIP5	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.956
	SRR3591706	second leaf	1.791
	SRR3591707	mature leaf	1.490
	SRR3591708	Shoot apex	3.146
	SRR3591709	Stem	1.695
	SRR3591710	White floral bud	1.877
	SRR3591711	White flower	0.375
	SRR3591712	Green floral bud	0.826
	SRR3591713	Yellow flower	0.093
SRP173429	SRR8316895	Juvenile bud stage	3.321
	SRR8316896	Juvenile bud stage	2.739
	SRR8316897	Juvenile bud stage	0.914
	SRR8316894	Third green stage	2.121
	SRR8316900	Third green stage	4.718
	SRR8316901	Third green stage	4.350
	SRR8316898	Complete white stage	1.504
	SRR8316899	Complete white stage	5.018
	SRR8316903	Complete white stage	3.548
	SRR8316902	Silver flowering stage	2.335
	SRR8316904	Silver flowering stage	3.080
	SRR8316905	Silver flowering stage	2.320
	SRR8316906	Gold flowering stage	3.323
	SRR8316907	Gold flowering stage	2.826
	SRR8316908	Gold flowering stage	2.622
SRP132670	SRR6706286	Control	7.347
	SRR6706287	Light intensity 50%	7.134
	SRR6706288	Light intensity 20%	7.775
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.046
	CNS0095593	Slightly white alabastrum(diploid) 2	4.194
	CNS0095594	Slightly white alabastrum(diploid) 3	1.857
	CNS0095595	Whole white alabastrum(diploid) 2	2.022
	CNS0095596	Whole white alabastrum(diploid) 3	3.200
	CNS0095597	Whole white alabastrum(diploid) 4	4.575
	CNS0095598	Silvery flower (diploied) 1	3.797
	CNS0095599	Silvery flower (diploied) 2	3.381
	CNS0095600	Silvery flower (diploied) 3	4.124
	CNS0095601	Golden flower (diploid) 1	3.632
	CNS0095602	Golden flower (diploid) 2	5.815
	CNS0095603	Golden flower (diploid) 3	4.724
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.956
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.687
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.161
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.399
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.362
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.422
	CNS0095610	Silvery flower (tetraploid) 1	0.571
	CNS0095611	Silvery flower (tetraploid) 2	1.427
	CNS0095612	Silvery flower (tetraploid) 3	1.434
	CNS0095613	Golden flower (tetraploid) 1	0.031
	CNS0095614	Golden flower (tetraploid) 2	0.201
	CNS0095615	Golden flower (tetraploid) 3	0.253
CRA001975	CRR073297	Stem 1	5.595
	CRR073298	Stem 2	6.928
	CRR073299	Stem 3	5.692
	CRR073300	Leaf 1	5.981
	CRR073301	Leaf 2	4.411
	CRR073302	Leaf 3	5.789
	CRR073303	Juvenile bud 1	6.273
	CRR073304	Juvenile bud 2	5.279
	CRR073305	Juvenile bud 3	4.786
	CRR073306	Third green 1	8.642
	CRR073307	Third green 2	5.667
	CRR073308	Third green 3	6.118
	CRR073309	Second white 1	2.855
	CRR073310	Second white 2	2.460
	CRR073311	Second white 3	1.881
	CRR073312	Silver flowering 1	0.566
	CRR073313	Silver flowering 2	1.227
	CRR073314	Silver flowering 3	0.428
	CRR073315	Gold flowering 1	5.632
	CRR073316	Gold flowering 2	6.705
	CRR073317	Gold flowering 3	5.309
	CRR073318	Tawny withering 1	2.835
	CRR073319	Tawny withering 2	4.157
	CRR073320	Tawny withering 3	3.845