Gene detail

Detail information of GWHGAAZE027297

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010096102.1	0	EH domain-containing protein 1 [Morus notabilis]
COG	YP_007468115.1	5E-24	dynamin family protein
trEMBL	tr\|W9RP66\|W9RP66_9ROSA	0	EH domain-containing protein 1 {ECO:0000313\|EMBL:EXB63267.1}
TAIR10	AT3G20290.2	0	EPS15 homology domain 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	17300513	17305256	+
GWHAAZE00000008	mRNA	17300513	17305256	+
GWHAAZE00000008	exon	17300513	17300597	+
GWHAAZE00000008	exon	17300685	17300764	+
GWHAAZE00000008	exon	17301103	17301171	+
GWHAAZE00000008	exon	17301266	17301323	+
GWHAAZE00000008	exon	17301441	17301496	+
GWHAAZE00000008	exon	17301578	17301620	+
GWHAAZE00000008	exon	17301710	17301771	+
GWHAAZE00000008	exon	17302906	17303019	+
GWHAAZE00000008	exon	17303160	17303250	+
GWHAAZE00000008	exon	17303346	17303395	+
GWHAAZE00000008	exon	17303506	17303634	+
GWHAAZE00000008	exon	17303721	17303972	+
GWHAAZE00000008	exon	17304072	17304151	+
GWHAAZE00000008	exon	17304576	17304702	+
GWHAAZE00000008	exon	17304796	17304939	+
GWHAAZE00000008	exon	17305039	17305256	+
GWHAAZE00000008	CDS	17300513	17300597	+
GWHAAZE00000008	CDS	17300685	17300764	+
GWHAAZE00000008	CDS	17301103	17301171	+
GWHAAZE00000008	CDS	17301266	17301323	+
GWHAAZE00000008	CDS	17301441	17301496	+
GWHAAZE00000008	CDS	17301578	17301620	+
GWHAAZE00000008	CDS	17301710	17301771	+
GWHAAZE00000008	CDS	17302906	17303019	+
GWHAAZE00000008	CDS	17303160	17303250	+
GWHAAZE00000008	CDS	17303346	17303395	+
GWHAAZE00000008	CDS	17303506	17303634	+
GWHAAZE00000008	CDS	17303721	17303972	+
GWHAAZE00000008	CDS	17304072	17304151	+
GWHAAZE00000008	CDS	17304576	17304702	+
GWHAAZE00000008	CDS	17304796	17304939	+
GWHAAZE00000008	CDS	17305039	17305224	+
GWHAAZE00000008	three_prime_UTR	17305225	17305256	+

Transcript Sequence
>GWHTAAZE027331 ATGGAGATTGATTCAACTCCGATTAACCGGTGCTCCAAAGAGCACCAAAAGATCTACCAGGAATGGTTTAATTGTGCTGATTCAGACGGAGATGGACGAATTACGGGAGGTGATGCGACTAAGTTCTTTGGCATGTCTAATTTACCTCGACAAGATCTCAAGCAGGTGTGGGCAATTGCAGATTCCAAACGACAAGGCTTTCTTGGTTTTAAAGAGTTTGTTACCGCAATGCAGTTAGTTTCTTTGGCACAAGCCGGACATGAGCTAACTATCGATATCTTAAATGACAAAGTTGACTTTGAAAATTTGAAACCTCCCGTCATGGATGGCTTGGATTCGTTAATAGCTAAGAAAAAGCGCAGAGCTAAAAAAATTGACCCAGAGCTGAATGGTAGTTCCGACGTGCAATCTTCACAACCGCTTTGGTTTACCTCTTCAAAATCTGCAAAGAAGGTACATTTATATTCAGTCACATCAATCGTTGACGGATTGAAGAAGTTATATGTTCAGAAATTGAAGCCATTAGAAGTTACATATCGTTTTAACGATTTCGTATCTCCTTTATTGACAAGTAGTGATTTTGATGCCAAGCCCATGGTGATGCTTTTGGGCCAATACTCGACGGGGAAAACAACATTCATTAAGCATTTGCTCGGCAGAGCTCATATTGGACCCGAGCCGACGACAGACAGATTTGTTGTTGTTATGCATGGACCCGACGAGAGAAGTATTCCGGGGAATACTGTTGCTGTCCAAGCAGACATGCCATATAGCGGTCTAACTACTTTTGGAACCTCATTTTTGTCAAAATTTGAATGTTCTCAAACTCCACATCCTCTGCTGGAGCACATTACATTTGTGGATACTCCCGGGGTTTTATCAGGGGAAAAGCAAAGAACAGAAAGAAGTTATGATTTTACGGGTGTAACGTCATGGTTTGCTGCAAAGTGTGACCTCATTCTACTTCTCTTTGATCCACACAAACTTGATATCAGTGACGAATTCAAACGAGTGATTTCATCTTTGCGAGGACATGATGATAAGATAAGGATAGTGTTGAACAAGGCTGAACAAATTGATACTCAGCAACTGATGAGGGTATATGGAGCATTGATGTGGTCTCTTGGAAAAGTTCTGAATACTCCAGAGGTCATGCGTGTTTACATTGGCTCATTCAATGACAAACCAATAAATGAGTCTGCCTCAGGTCCACTTGGGAAAGAACTATTTGAGAAAGAACAGGAAGACCTTCTTACTGATTTAAGAAACATCCCGAAGAAGGCTTGTGAACGACGAATCAATGAGTTTGTGAAGCGAGCTAGGGCCGCCAAGATTCATGCTTACATTATCGGCCATCTTAAAAAGGAGATGCCCGCAATGATAGGGAAAGCCAAAACTCAACAAAGACTCATTGATAACCTGGCAGATGAATTCGCCAAGGTTCAAAGAGAGCATCATTTACCGGCGGGAGATTTTCCTAACGTGGAGCAGTTTAGAGAGAGATTGAGCGGTTACAACTTTGATAAGTTTGAGAAATTGAGGTCTACAAAGATACAATCTGTTGATGACATGCTCGGACACGACATACCAAAACTCTTAAAGAACTTCCAAAATCCCTACGGGTAAAGATGGTCGATGATGGATGTTGTTTCAATTCT

Network for GWHGAAZE027297

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12763.8	EF-hand_4	15	80	1.30E-06
PF16880.6	EHD_N	163	195	9.80E-16
PF00350.24	Dynamin_N	200	355	8.10E-13
PF18150.2	DUF5600	431	532	1.80E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12483	EHD1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding
GO:0005515	molecular_function	protein binding
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.770
	SRR3591706	second leaf	0.923
	SRR3591707	mature leaf	0.344
	SRR3591708	Shoot apex	0.326
	SRR3591709	Stem	1.925
	SRR3591710	White floral bud	73.079
	SRR3591711	White flower	5.587
	SRR3591712	Green floral bud	54.863
	SRR3591713	Yellow flower	4.114
SRP173429	SRR8316895	Juvenile bud stage	2.574
	SRR8316896	Juvenile bud stage	23.182
	SRR8316897	Juvenile bud stage	10.505
	SRR8316894	Third green stage	11.290
	SRR8316900	Third green stage	42.673
	SRR8316901	Third green stage	45.371
	SRR8316898	Complete white stage	0.320
	SRR8316899	Complete white stage	0.298
	SRR8316903	Complete white stage	0.405
	SRR8316902	Silver flowering stage	1.645
	SRR8316904	Silver flowering stage	4.338
	SRR8316905	Silver flowering stage	1.467
	SRR8316906	Gold flowering stage	1.710
	SRR8316907	Gold flowering stage	2.121
	SRR8316908	Gold flowering stage	1.746
SRP132670	SRR6706286	Control	25.723
	SRR6706287	Light intensity 50%	25.770
	SRR6706288	Light intensity 20%	22.979
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	58.404
	CNS0095593	Slightly white alabastrum(diploid) 2	43.669
	CNS0095594	Slightly white alabastrum(diploid) 3	65.168
	CNS0095595	Whole white alabastrum(diploid) 2	118.716
	CNS0095596	Whole white alabastrum(diploid) 3	139.300
	CNS0095597	Whole white alabastrum(diploid) 4	160.631
	CNS0095598	Silvery flower (diploied) 1	4.536
	CNS0095599	Silvery flower (diploied) 2	17.921
	CNS0095600	Silvery flower (diploied) 3	3.131
	CNS0095601	Golden flower (diploid) 1	7.258
	CNS0095602	Golden flower (diploid) 2	2.020
	CNS0095603	Golden flower (diploid) 3	1.492
	CNS0095604	Slightly white alabastrum(tetraploid) 1	88.883
	CNS0095605	Slightly white alabastrum(tetraploid) 2	88.138
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.195
	CNS0095607	Whole white alabastrum(tetraploid) 1	171.023
	CNS0095608	Whole white alabastrum(tetraploid) 2	163.812
	CNS0095609	Whole white alabastrum(tetraploid) 3	58.819
	CNS0095610	Silvery flower (tetraploid) 1	4.005
	CNS0095611	Silvery flower (tetraploid) 2	8.707
	CNS0095612	Silvery flower (tetraploid) 3	31.658
	CNS0095613	Golden flower (tetraploid) 1	4.675
	CNS0095614	Golden flower (tetraploid) 2	1.204
	CNS0095615	Golden flower (tetraploid) 3	12.127
CRA001975	CRR073297	Stem 1	9.018
	CRR073298	Stem 2	10.788
	CRR073299	Stem 3	3.943
	CRR073300	Leaf 1	38.827
	CRR073301	Leaf 2	21.199
	CRR073302	Leaf 3	10.434
	CRR073303	Juvenile bud 1	23.858
	CRR073304	Juvenile bud 2	16.597
	CRR073305	Juvenile bud 3	1.766
	CRR073306	Third green 1	10.962
	CRR073307	Third green 2	12.252
	CRR073308	Third green 3	13.758
	CRR073309	Second white 1	0.697
	CRR073310	Second white 2	4.099
	CRR073311	Second white 3	5.524
	CRR073312	Silver flowering 1	11.014
	CRR073313	Silver flowering 2	9.786
	CRR073314	Silver flowering 3	5.853
	CRR073315	Gold flowering 1	10.316
	CRR073316	Gold flowering 2	4.243
	CRR073317	Gold flowering 3	1.064
	CRR073318	Tawny withering 1	12.683
	CRR073319	Tawny withering 2	15.329
	CRR073320	Tawny withering 3	11.307