Gene detail

Detail information of GWHGAAZE027295

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009770784.1	1.36753E-61	PREDICTED: ethylene-responsive transcription factor 3-like [Nicotiana sylvestris]
Swissprot	tr\|Q9SXS8\|ERF3_TOBAC	2E-55	Ethylene-responsive transcription factor 3
trEMBL	tr\|A0A022QFA2\|A0A022QFA2_ERYGU	9E-62	Uncharacterized protein {ECO:0000313\|EMBL:EYU27372.1}
TAIR10	AT1G50640.1	3E-22	ethylene responsive element binding factor 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	17284636	17285283	+
GWHAAZE00000008	mRNA	17284636	17285283	+
GWHAAZE00000008	exon	17284636	17284871	+
GWHAAZE00000008	exon	17284902	17285283	+
GWHAAZE00000008	CDS	17284636	17284871	+
GWHAAZE00000008	CDS	17284902	17285283	+

Transcript Sequence
>GWHTAAZE027329 ATGAAAGCCAGAGCAGCGGCGGCGGTTGCCGGAGAAGCGAACGGATCCGGTGGATCGAAAGAGATAAAGTTCCGAGGTGTGAGAAAGAGACCATGGGGTAGGTTTGCAGCTGAAATCAGGGACCCCTGTAAGAAGACTAGGGTTTGGCTAGGTACCTTTGACTCAGCCGAGGACGCGGCTCGAGCCTACGACGCCGCCGCTCTCTCCTTACGCGGCTCCAAAGCCAAAATCAACTTACTTCCTTATCCTCCTCCTCCTCCTCCTCATTTCCAACAAAACCCTAACGATCTGTTCGTGGATCGTCGTTTTTACCCTCAGAACAACCACCGGGTTATTCCTCAGAGACCCACCTCTAGTGGTATGAGCAGCACCGTCGAGTCCTTCAGTGGGCCTAAGCAGACGGTCTCGAGGCCAATTCTGCCAGCGACGATCTTAAGGAACGATTGTCACAGCGACTGCGACTCGTCTTCGTCGGTAATTGACGATGGGGACGGTGGTGATATAGCTTCTTCATCTTTTCGCAAGCCGTTGCCTTTCGATCTGAACTTGGCTCCGCCGTTGGATGAGGCTGATTTTCCGGATGAGGAGGATCTTCATTGCACAGCTCTTCGTCTTTGA

Network for GWHGAAZE027295

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	23	72	4.50E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	113.117
	SRR3591706	second leaf	53.046
	SRR3591707	mature leaf	63.043
	SRR3591708	Shoot apex	92.351
	SRR3591709	Stem	139.440
	SRR3591710	White floral bud	100.761
	SRR3591711	White flower	145.515
	SRR3591712	Green floral bud	109.142
	SRR3591713	Yellow flower	177.635
SRP173429	SRR8316895	Juvenile bud stage	57.548
	SRR8316896	Juvenile bud stage	72.407
	SRR8316897	Juvenile bud stage	38.495
	SRR8316894	Third green stage	30.020
	SRR8316900	Third green stage	87.887
	SRR8316901	Third green stage	84.624
	SRR8316898	Complete white stage	50.447
	SRR8316899	Complete white stage	119.511
	SRR8316903	Complete white stage	62.993
	SRR8316902	Silver flowering stage	78.352
	SRR8316904	Silver flowering stage	83.497
	SRR8316905	Silver flowering stage	51.720
	SRR8316906	Gold flowering stage	168.217
	SRR8316907	Gold flowering stage	161.380
	SRR8316908	Gold flowering stage	194.283
SRP132670	SRR6706286	Control	100.948
	SRR6706287	Light intensity 50%	88.708
	SRR6706288	Light intensity 20%	93.532
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	82.279
	CNS0095593	Slightly white alabastrum(diploid) 2	87.672
	CNS0095594	Slightly white alabastrum(diploid) 3	77.751
	CNS0095595	Whole white alabastrum(diploid) 2	80.966
	CNS0095596	Whole white alabastrum(diploid) 3	79.742
	CNS0095597	Whole white alabastrum(diploid) 4	70.378
	CNS0095598	Silvery flower (diploied) 1	110.788
	CNS0095599	Silvery flower (diploied) 2	109.195
	CNS0095600	Silvery flower (diploied) 3	200.911
	CNS0095601	Golden flower (diploid) 1	143.634
	CNS0095602	Golden flower (diploid) 2	221.626
	CNS0095603	Golden flower (diploid) 3	216.039
	CNS0095604	Slightly white alabastrum(tetraploid) 1	82.485
	CNS0095605	Slightly white alabastrum(tetraploid) 2	84.724
	CNS0095606	Slightly white alabastrum(tetraploid) 3	115.869
	CNS0095607	Whole white alabastrum(tetraploid) 1	62.994
	CNS0095608	Whole white alabastrum(tetraploid) 2	55.821
	CNS0095609	Whole white alabastrum(tetraploid) 3	91.488
	CNS0095610	Silvery flower (tetraploid) 1	180.808
	CNS0095611	Silvery flower (tetraploid) 2	224.131
	CNS0095612	Silvery flower (tetraploid) 3	262.779
	CNS0095613	Golden flower (tetraploid) 1	218.692
	CNS0095614	Golden flower (tetraploid) 2	232.497
	CNS0095615	Golden flower (tetraploid) 3	398.561
CRA001975	CRR073297	Stem 1	98.443
	CRR073298	Stem 2	103.445
	CRR073299	Stem 3	124.277
	CRR073300	Leaf 1	129.816
	CRR073301	Leaf 2	127.107
	CRR073302	Leaf 3	167.944
	CRR073303	Juvenile bud 1	154.327
	CRR073304	Juvenile bud 2	149.203
	CRR073305	Juvenile bud 3	137.584
	CRR073306	Third green 1	367.447
	CRR073307	Third green 2	352.889
	CRR073308	Third green 3	329.321
	CRR073309	Second white 1	483.021
	CRR073310	Second white 2	384.756
	CRR073311	Second white 3	333.177
	CRR073312	Silver flowering 1	470.320
	CRR073313	Silver flowering 2	536.109
	CRR073314	Silver flowering 3	409.564
	CRR073315	Gold flowering 1	97.766
	CRR073316	Gold flowering 2	91.447
	CRR073317	Gold flowering 3	108.368
	CRR073318	Tawny withering 1	181.133
	CRR073319	Tawny withering 2	159.346
	CRR073320	Tawny withering 3	160.253