Gene detail

Detail information of GWHGAAZE027292

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KCW77007.1	2.0015E-173	hypothetical protein EUGRSUZ_D01356 [Eucalyptus grandis]
COG	YP_899729.1	7E-111	cysteinyl-tRNA synthetase
trEMBL	tr\|A0A059CF73\|A0A059CF73_EUCGR	7E-174	Uncharacterized protein {ECO:0000313\|EMBL:KCW77007.1}
TAIR10	AT5G38830.1	1E-132	Cysteinyl-tRNA synthetase, class Ia family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	17249932	17256318	+
GWHAAZE00000008	mRNA	17249932	17256318	+
GWHAAZE00000008	exon	17249932	17250128	+
GWHAAZE00000008	exon	17250246	17250279	+
GWHAAZE00000008	exon	17252332	17252493	+
GWHAAZE00000008	exon	17253306	17253476	+
GWHAAZE00000008	exon	17253696	17253977	+
GWHAAZE00000008	exon	17255573	17255818	+
GWHAAZE00000008	exon	17255909	17256022	+
GWHAAZE00000008	exon	17256100	17256318	+
GWHAAZE00000008	CDS	17249932	17250128	+
GWHAAZE00000008	CDS	17250246	17250279	+
GWHAAZE00000008	CDS	17252332	17252493	+
GWHAAZE00000008	CDS	17253306	17253476	+
GWHAAZE00000008	CDS	17253696	17253977	+
GWHAAZE00000008	CDS	17255573	17255818	+
GWHAAZE00000008	CDS	17255909	17256022	+
GWHAAZE00000008	CDS	17256100	17256318	+

Transcript Sequence
>GWHTAAZE027326 ATGGAAGAAGCAGTGTTGACGAACCAACAACATTCAAGGAAGGATTTGTACATATACAACACAATGAGTGGAGAGAAGGAGGTCTTCAAGACCATTACTCCAGGGGAAGTTAAAATGTATTTTTGTGGTATTACTCCTTATGATTACAGCCACGTTGGCCATGGCCGCTCCATTGTCTCTTTCGATGTTCTTTACAGATATTTGAAGTACCTGGGATACAATGTCATCTACATTATCAACAAAGCAAATGAACTCAACGAAGATATATTAACCGTCAGTAGGCGCTTCTCAGATCTATTTATTGATGAAATGACTGATCTTCAGTGCCTTCCTCCCACCCGTGAGCCGCGGGTTTCTGAGCACATGCACCATATTATTAAACTAATAAATGAGATTATTCATAATGGCTGTGCATATGCAGTTGACGGGAATGTGTACTTCTCAGTTGCTAAATGCGAAAATTACGGATGCTTATCTCGACAGATTACTGAAGAAACCATAGCTGGCAAACGAGTTAAAGTTGATCCCAACAAACAAGTTCCTTCTGACTTTGCCTTGTGGAAGGCTGCAAAGCCAGGAGAACCATATTGGGACAGCCCTTGGGGTCGTGGAAGACCAGGGTGGCACATAGAGTGCAGCGCTATGAGTTCTGAGTATCTTAGCTTTAAGTTTGACATTCATGGCGGTGGAATGGATTTGAAGTTTCCGCATCATGAAAATGAGATTGCCCAGAGTTGGGCAGCCCGCCCTGAAAGCAAAGTCGGTTATTGGGTGCATGTTGGTAGTGCCTTAAAGGACGGCAAAAAAATGTCAAAATCAGATGGAAATTACATAACCATTGCCGAGACCTTGGAAGATTGTGAGGTTGCAGTATCCGACTATAGGCAAGGAATCCCAGAGGAGCAAAATGATAGTCCAAAAGTTAAAGCAGGCGCAACAGGCCAGGTTACTGCCGAATCTCAACAGTGCATAAAAAGTTTATGGAATGATTTTGAAACCAAAATGTCTGATGACTTGCAAACTACAATCATATTGACTGGCGTCATTCTAGAACCCCTGAAGTTCATTAACAAAAGTTTAAAAAATCACAAGAAGATGAAAGGAAAGCAGCAGCAATCATTGACTCAGTCCTTGATAGAAATAGAGAAAGAAGTAAAGAAAGTGTTGAGCATTCTTGGGTTGTTGTCTCCTTTGAGCCATTCCGAGGTAATTAAAGAGCTAAAGGAGAAGGCATTGGAAAGAGCAGATTTGAAGGAAGAGTATGTCTTGGAGATGATTAGAGAACGAGGACAAGCGAGGAAGGGGAAAGACTTCACAAGGGCTGATGAGATAAGGAGGAATTTGGAAGCCAAAGGCATTACCCTTGAGGATGCCATTGGGCAAGACACCACATACTGGAGGCCTTGTGTACCACTTCATTCTTAA

Network for GWHGAAZE027292

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01406.20	tRNA-synt_1e	29	288	4.50E-93

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01883	CARS, cysS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006423	biological_process	cysteinyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0004817	molecular_function	cysteine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.864
	SRR3591706	second leaf	1.876
	SRR3591707	mature leaf	0.931
	SRR3591708	Shoot apex	2.814
	SRR3591709	Stem	3.067
	SRR3591710	White floral bud	5.055
	SRR3591711	White flower	7.791
	SRR3591712	Green floral bud	9.019
	SRR3591713	Yellow flower	5.378
SRP173429	SRR8316895	Juvenile bud stage	21.483
	SRR8316896	Juvenile bud stage	28.381
	SRR8316897	Juvenile bud stage	10.986
	SRR8316894	Third green stage	8.380
	SRR8316900	Third green stage	19.527
	SRR8316901	Third green stage	15.096
	SRR8316898	Complete white stage	3.889
	SRR8316899	Complete white stage	14.856
	SRR8316903	Complete white stage	5.079
	SRR8316902	Silver flowering stage	6.691
	SRR8316904	Silver flowering stage	8.245
	SRR8316905	Silver flowering stage	3.744
	SRR8316906	Gold flowering stage	12.897
	SRR8316907	Gold flowering stage	9.553
	SRR8316908	Gold flowering stage	10.279
SRP132670	SRR6706286	Control	17.507
	SRR6706287	Light intensity 50%	16.300
	SRR6706288	Light intensity 20%	18.162
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.259
	CNS0095593	Slightly white alabastrum(diploid) 2	12.458
	CNS0095594	Slightly white alabastrum(diploid) 3	17.576
	CNS0095595	Whole white alabastrum(diploid) 2	9.554
	CNS0095596	Whole white alabastrum(diploid) 3	9.667
	CNS0095597	Whole white alabastrum(diploid) 4	11.747
	CNS0095598	Silvery flower (diploied) 1	6.235
	CNS0095599	Silvery flower (diploied) 2	4.349
	CNS0095600	Silvery flower (diploied) 3	8.919
	CNS0095601	Golden flower (diploid) 1	5.100
	CNS0095602	Golden flower (diploid) 2	8.318
	CNS0095603	Golden flower (diploid) 3	6.330
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.504
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.963
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.953
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.940
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.345
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.546
	CNS0095610	Silvery flower (tetraploid) 1	16.019
	CNS0095611	Silvery flower (tetraploid) 2	15.369
	CNS0095612	Silvery flower (tetraploid) 3	16.275
	CNS0095613	Golden flower (tetraploid) 1	11.461
	CNS0095614	Golden flower (tetraploid) 2	13.415
	CNS0095615	Golden flower (tetraploid) 3	6.615
CRA001975	CRR073297	Stem 1	23.958
	CRR073298	Stem 2	21.975
	CRR073299	Stem 3	37.346
	CRR073300	Leaf 1	14.468
	CRR073301	Leaf 2	12.105
	CRR073302	Leaf 3	13.611
	CRR073303	Juvenile bud 1	13.672
	CRR073304	Juvenile bud 2	10.818
	CRR073305	Juvenile bud 3	9.786
	CRR073306	Third green 1	3.730
	CRR073307	Third green 2	2.449
	CRR073308	Third green 3	3.437
	CRR073309	Second white 1	3.354
	CRR073310	Second white 2	6.829
	CRR073311	Second white 3	5.061
	CRR073312	Silver flowering 1	3.260
	CRR073313	Silver flowering 2	2.230
	CRR073314	Silver flowering 3	3.033
	CRR073315	Gold flowering 1	2.057
	CRR073316	Gold flowering 2	1.061
	CRR073317	Gold flowering 3	0.784
	CRR073318	Tawny withering 1	3.378
	CRR073319	Tawny withering 2	2.551
	CRR073320	Tawny withering 3	3.960