Gene detail

Detail information of GWHGAAZE027279

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13803.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068V1P3\|A0A068V1P3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313\|EMBL:CDP13803.1}
TAIR10	AT3G20800.1	4E-126	Cell differentiation, Rcd1-like protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	17136054	17141494	+
GWHAAZE00000008	mRNA	17136054	17141494	+
GWHAAZE00000008	exon	17136054	17136254	+
GWHAAZE00000008	exon	17137269	17137340	+
GWHAAZE00000008	exon	17137726	17137815	+
GWHAAZE00000008	exon	17137932	17137974	+
GWHAAZE00000008	exon	17138218	17138333	+
GWHAAZE00000008	exon	17140526	17140716	+
GWHAAZE00000008	exon	17140858	17140927	+
GWHAAZE00000008	exon	17141387	17141494	+
GWHAAZE00000008	CDS	17136054	17136254	+
GWHAAZE00000008	CDS	17137269	17137340	+
GWHAAZE00000008	CDS	17137726	17137815	+
GWHAAZE00000008	CDS	17137932	17137974	+
GWHAAZE00000008	CDS	17138218	17138333	+
GWHAAZE00000008	CDS	17140526	17140716	+
GWHAAZE00000008	CDS	17140858	17140927	+
GWHAAZE00000008	CDS	17141387	17141494	+

Transcript Sequence
>GWHTAAZE027313 ATGATGGCAAATCTCCCTCAGTCTATCTCCGCCATGAACAATGGTGGTGGCTTCGGTGGTGTTTCTTCTGCGGGAGTCAATTCCGTCGGAGGAGGATCATCTCAGGTCAACAAGGACCGTAAGATGCAATCTGCCGAGCAGCTTGTCCTTGATCTCAGCAACCCCGATCTCCGTGAAAACGCTCTTCTCGAACTCTCCAAGAAGAGAGAATTATTTCAAGATTTGGCTCCATTATTGTGGAATTCCTTTGGTACTATTGCTGCACTATTACAGGAGATTGTTTCAATCTACCCTGTTTTATCACCGCCGAACCTGACTCCTGCACAATCAAATAGAGTTTGCAATGCTCTTGCTCTACTTCAGTGTGTAGCCTCTCATCCAGACACAAGGATGTTGTTCCTCAATGCCCATATTCCTTTATATCTGTACCCATTTCTGAACACAACAAGCAAATCAAGGCCTTTTGAGTACCTAAGGCTTACTAGCTTAGGTGTCATTGGTGCCCTCGTGAAGGTACGTCTCGTTGCCACATTTATAGTGCAGAAGATATTGTTGGATGATGTGGGATTGGATTATATTTGCACCACAGCAGAGCGCTTTTTTGCAGTGGGTAGAGTTCTGGGGAATATGGTTGCTTCATTGGCGGACCAACCCTCTTCAAGGCTGCTGAAGCACATAATTCGGTGTTACCTTCGCTTATCAGATAATCCAAGGGCATGTGATGCACTGAGGAATTGCCTTCCAGACATGCTGAGAGATGCTACATTCAGTAGTTGCCTTCGTGAAGACCCAACGACTAGGAGGTGGCTGCAACAGTTGCTTCACAATGTGCAAGGGCCTCGGGTTGCCCTTCAGGCTGGGGGTGGTTTTGATCATATGTTGGTCAACTGA

Network for GWHGAAZE027279

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04078.14	Rcd1	48	172	3.60E-60
PF04078.14	Rcd1	173	277	1.30E-44

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Rcd1-like

KEGG pathway

KO	Enzyme	pathway	mapID
K12606	RCD1, CNOT9, CAF40	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	79.768
	SRR3591706	second leaf	41.700
	SRR3591707	mature leaf	42.451
	SRR3591708	Shoot apex	52.233
	SRR3591709	Stem	65.584
	SRR3591710	White floral bud	56.544
	SRR3591711	White flower	57.965
	SRR3591712	Green floral bud	103.187
	SRR3591713	Yellow flower	44.094
SRP173429	SRR8316895	Juvenile bud stage	85.281
	SRR8316896	Juvenile bud stage	141.602
	SRR8316897	Juvenile bud stage	78.995
	SRR8316894	Third green stage	28.107
	SRR8316900	Third green stage	101.084
	SRR8316901	Third green stage	118.579
	SRR8316898	Complete white stage	35.993
	SRR8316899	Complete white stage	84.460
	SRR8316903	Complete white stage	43.584
	SRR8316902	Silver flowering stage	29.153
	SRR8316904	Silver flowering stage	36.997
	SRR8316905	Silver flowering stage	17.069
	SRR8316906	Gold flowering stage	50.211
	SRR8316907	Gold flowering stage	48.789
	SRR8316908	Gold flowering stage	48.804
SRP132670	SRR6706286	Control	83.578
	SRR6706287	Light intensity 50%	85.379
	SRR6706288	Light intensity 20%	87.223
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	88.915
	CNS0095593	Slightly white alabastrum(diploid) 2	92.754
	CNS0095594	Slightly white alabastrum(diploid) 3	99.725
	CNS0095595	Whole white alabastrum(diploid) 2	109.373
	CNS0095596	Whole white alabastrum(diploid) 3	93.337
	CNS0095597	Whole white alabastrum(diploid) 4	79.369
	CNS0095598	Silvery flower (diploied) 1	72.475
	CNS0095599	Silvery flower (diploied) 2	147.833
	CNS0095600	Silvery flower (diploied) 3	92.095
	CNS0095601	Golden flower (diploid) 1	97.605
	CNS0095602	Golden flower (diploid) 2	103.726
	CNS0095603	Golden flower (diploid) 3	102.957
	CNS0095604	Slightly white alabastrum(tetraploid) 1	124.489
	CNS0095605	Slightly white alabastrum(tetraploid) 2	102.663
	CNS0095606	Slightly white alabastrum(tetraploid) 3	82.570
	CNS0095607	Whole white alabastrum(tetraploid) 1	122.209
	CNS0095608	Whole white alabastrum(tetraploid) 2	138.664
	CNS0095609	Whole white alabastrum(tetraploid) 3	139.783
	CNS0095610	Silvery flower (tetraploid) 1	76.831
	CNS0095611	Silvery flower (tetraploid) 2	84.049
	CNS0095612	Silvery flower (tetraploid) 3	53.627
	CNS0095613	Golden flower (tetraploid) 1	48.771
	CNS0095614	Golden flower (tetraploid) 2	61.920
	CNS0095615	Golden flower (tetraploid) 3	38.899
CRA001975	CRR073297	Stem 1	67.079
	CRR073298	Stem 2	62.906
	CRR073299	Stem 3	72.730
	CRR073300	Leaf 1	78.022
	CRR073301	Leaf 2	89.599
	CRR073302	Leaf 3	92.503
	CRR073303	Juvenile bud 1	85.524
	CRR073304	Juvenile bud 2	85.594
	CRR073305	Juvenile bud 3	81.853
	CRR073306	Third green 1	59.870
	CRR073307	Third green 2	61.814
	CRR073308	Third green 3	50.587
	CRR073309	Second white 1	53.595
	CRR073310	Second white 2	38.756
	CRR073311	Second white 3	31.033
	CRR073312	Silver flowering 1	33.279
	CRR073313	Silver flowering 2	44.926
	CRR073314	Silver flowering 3	32.647
	CRR073315	Gold flowering 1	49.340
	CRR073316	Gold flowering 2	46.170
	CRR073317	Gold flowering 3	46.800
	CRR073318	Tawny withering 1	54.175
	CRR073319	Tawny withering 2	52.804
	CRR073320	Tawny withering 3	50.221