Gene detail

Detail information of GWHGAAZE027274

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15776.1	1.4424E-154	unnamed protein product [Coffea canephora]
COG	NP_294937.1	3E-23	serine/threonine protein kinase
Swissprot	tr\|O22040\|ANP1_ARATH	2E-48	Mitogen-activated protein kinase kinase kinase ANP1
trEMBL	tr\|A0A068V557\|A0A068V557_COFCA	5E-155	Coffea canephora DH200=94 genomic scaffold, scaffold_108 {ECO:0000313\|EMBL:CDP15776.1}
TAIR10	AT5G55090.1	2E-94	mitogen-activated protein kinase kinase kinase 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	17075729	17077051	-
GWHAAZE00000008	mRNA	17075729	17077051	-
GWHAAZE00000008	exon	17075729	17077051	-
GWHAAZE00000008	CDS	17075729	17077051	-

Transcript Sequence
>GWHTAAZE027308 ATGGAGTGGATAAGGGGTCCCACCATCGGCCGCGGCTCAACCGCCACCGTCTCTCTTGCCACTACCGCCTCCGGCAATCTCATCGCCGTCAAGTCCACCGACCACTCTCTCGCCAGCTTTTTGCTAAAAGAACAATATATTTTGTCCCAATTATGCTCTCCATATATAGTAGAGTACATTGGTTTTGATACTACAAACGAAAATTCGAAGCCTATATACAATCTTTTCTTGGAATACATGCCCGGTGGTTCACTCTCCAATGTCATCAAGAATCAAGGAGGTCCAATTGATGAGAATTTGATTAAATTATATACCCATCAAATTTTACTAGGATTGGATTACCTTCATTCTAATAATTTGGTGCATTGTGACATCAAGAGCCAAAATGTGCTAATTGGCAAAGATTGTGCCAAAATTGGGGACTTGGGTTGTGCTAAATTTGTCGGAGGTGGATGTGCTGACACGTCAGCATTTTCCGGTACACCGGTTTTTATGTCGCCGGAGGTGGCTCGTGGCGAATCGCAGGGGTTTCCAGCAGACGTGTGGGCACTTGGGTGCACGATAATCGAGATGGCCACCGGGTCCAACCCGTGGCCGGAGGTGGATGACCCGGCATCAGTTCTGTACAAAATCGGGTTTTCCGGCGACGTGCCGGAGTTTCCGCGGTGGTTATCGGAGGAAGCTGAGGATTTTTTGAGCAAGTGTCTGAAGAGAAATGTTGAAGATCGGTGGACGGTAAAACAACTTCTTGAACACCCATTTTTTGATTATTTGGAGTGTGATCGCGATCAATTAGAGGAATGTATGAAGAAGTCTCCAACTAGTGTATTAGATCACTGCTTTTGGGATTCATTAGAGGTGTCATCGGAGCCTCACCATAATCTGACTCCAACCGGCAACTCATCTGGGTCTCCGGTGGAGAGGATCAAGGGATTGGTGGGTCCGAGTTTACCTAATTGGGGAGATGAAGAAGATTGGATCACATTGAGGAGCAATCAGAGCGAAGAAAAAGAGGAAATATCAGAGCAGAGTGGTGTTGTGGAACAAGATGAGATACACCTGGCTAGTATGGAATTAATTGGTTTTTCAATTGATAATATAGAAGAGGGTGAAAGTTTTATTAGAAATGACGATTTGATATTAGAATGTCCAGTTTATGAAATTACGAATTATAGTACTATAGGACTAACCTTGTATCAAGATTTCTCAATTTGTGGCAAAGAATTATTAATGCAAACTTCAAATTATTCAAGTCAAGTTTTTTACAATTTGCGTCAACTTAAGTTGATCCTTCCTCGAAAAGAATTAGTGTTAATCCATTAA

Network for GWHGAAZE027274

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	7	255	3.80E-54

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
K20716	MAPKKK17_18	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.323
	SRR3591706	second leaf	0.525
	SRR3591707	mature leaf	0.083
	SRR3591708	Shoot apex	0.473
	SRR3591709	Stem	1.358
	SRR3591710	White floral bud	0.549
	SRR3591711	White flower	0.237
	SRR3591712	Green floral bud	0.921
	SRR3591713	Yellow flower	0.100
SRP173429	SRR8316895	Juvenile bud stage	0.171
	SRR8316896	Juvenile bud stage	0.269
	SRR8316897	Juvenile bud stage	0.284
	SRR8316894	Third green stage	0.251
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.514
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.372
	SRR8316904	Silver flowering stage	0.243
	SRR8316905	Silver flowering stage	0.052
	SRR8316906	Gold flowering stage	1.085
	SRR8316907	Gold flowering stage	1.396
	SRR8316908	Gold flowering stage	1.295
SRP132670	SRR6706286	Control	0.267
	SRR6706287	Light intensity 50%	0.689
	SRR6706288	Light intensity 20%	0.345
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.537
	CNS0095593	Slightly white alabastrum(diploid) 2	1.798
	CNS0095594	Slightly white alabastrum(diploid) 3	1.719
	CNS0095595	Whole white alabastrum(diploid) 2	1.699
	CNS0095596	Whole white alabastrum(diploid) 3	0.060
	CNS0095597	Whole white alabastrum(diploid) 4	0.116
	CNS0095598	Silvery flower (diploied) 1	1.565
	CNS0095599	Silvery flower (diploied) 2	1.646
	CNS0095600	Silvery flower (diploied) 3	1.402
	CNS0095601	Golden flower (diploid) 1	1.454
	CNS0095602	Golden flower (diploid) 2	2.176
	CNS0095603	Golden flower (diploid) 3	1.805
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.026
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.208
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.057
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.114
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.427
	CNS0095613	Golden flower (tetraploid) 1	0.149
	CNS0095614	Golden flower (tetraploid) 2	0.184
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.972
	CRR073298	Stem 2	0.659
	CRR073299	Stem 3	0.121
	CRR073300	Leaf 1	0.286
	CRR073301	Leaf 2	0.655
	CRR073302	Leaf 3	0.737
	CRR073303	Juvenile bud 1	0.530
	CRR073304	Juvenile bud 2	0.102
	CRR073305	Juvenile bud 3	0.095
	CRR073306	Third green 1	0.166
	CRR073307	Third green 2	0.856
	CRR073308	Third green 3	0.087
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.157
	CRR073315	Gold flowering 1	0.240
	CRR073316	Gold flowering 2	1.677
	CRR073317	Gold flowering 3	0.345
	CRR073318	Tawny withering 1	2.787
	CRR073319	Tawny withering 2	14.531
	CRR073320	Tawny withering 3	0.747