Detail information of GWHGAAZE027266


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006452377.10hypothetical protein CICLE_v10007338mg [Citrus clementina]
COGYP_005443915.10aconitate hydratase
Swissprottr|P49608|ACOC_CUCMA0Aconitate hydratase, cytoplasmic
trEMBLtr|A0A067FHT6|A0A067FHT6_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO62731.1}
TAIR10AT2G05710.10aconitase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1698944517003252-
GWHAAZE00000008mRNA1698944517003252-
GWHAAZE00000008exon1698944516989980-
GWHAAZE00000008exon1699015616990398-
GWHAAZE00000008exon1699048716990585-
GWHAAZE00000008exon1699102716991506-
GWHAAZE00000008exon1699159516991693-
GWHAAZE00000008exon1699227516992396-
GWHAAZE00000008exon1699322916993347-
GWHAAZE00000008exon1699346816993535-
GWHAAZE00000008exon1699528816995473-
GWHAAZE00000008exon1699574216995817-
GWHAAZE00000008exon1699591416995993-
GWHAAZE00000008exon1699609916996155-
GWHAAZE00000008exon1699625616996398-
GWHAAZE00000008exon1699649116996635-
GWHAAZE00000008exon1699690416997065-
GWHAAZE00000008exon1699730116997486-
GWHAAZE00000008exon1699781616997908-
GWHAAZE00000008exon1699798616998146-
GWHAAZE00000008exon1699836016998496-
GWHAAZE00000008exon1699983917000051-
GWHAAZE00000008exon1700230717002334-
GWHAAZE00000008exon1700309617003252-
GWHAAZE00000008CDS1700309617003252-
GWHAAZE00000008CDS1700230717002334-
GWHAAZE00000008CDS1699983917000051-
GWHAAZE00000008CDS1699836016998496-
GWHAAZE00000008CDS1699798616998146-
GWHAAZE00000008CDS1699781616997908-
GWHAAZE00000008CDS1699730116997486-
GWHAAZE00000008CDS1699690416997065-
GWHAAZE00000008CDS1699649116996635-
GWHAAZE00000008CDS1699625616996398-
GWHAAZE00000008CDS1699609916996155-
GWHAAZE00000008CDS1699591416995993-
GWHAAZE00000008CDS1699574216995817-
GWHAAZE00000008CDS1699528816995473-
GWHAAZE00000008CDS1699346816993535-
GWHAAZE00000008CDS1699322916993347-
GWHAAZE00000008CDS1699227516992396-
GWHAAZE00000008CDS1699159516991693-
GWHAAZE00000008CDS1699102716991506-
GWHAAZE00000008CDS1699048716990585-
GWHAAZE00000008CDS1699015616990398-
GWHAAZE00000008CDS1698991216989980-
GWHAAZE00000008three_prime_UTR1698944516989911-
Transcript Sequence

Network for GWHGAAZE027266

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0086map00630 Glyoxylate and dicarboxylate metabolism
map00020 Citrate cycle
GO:0006014 D-ribose metabolic process GOslim:biological_process
GO:0004747 ribokinase activity GOslim:molecular_function
map01200 Carbon metabolism
map01120 Microbial metabolism in diverse environments
GO:0016615 malate dehydrogenase activity GOslim:molecular_function
GO:0030060 L-malate dehydrogenase activity GOslim:molecular_function
GO:0006108 malate metabolic process GOslim:biological_process
map01100 Metabolic pathways
GO:0006099 tricarboxylic acid cycle GOslim:biological_process
GO:0019752 carboxylic acid metabolic process GOslim:biological_process
GO:0016773 phosphotransferase activity, alcohol group as acceptor GOslim:molecular_function
GO:0016301 kinase activity GOslim:molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GOslim:molecular_function
map00720 Carbon fixation pathways in prokaryotes
map00030 Pentose phosphate pathway
map00710 Carbon fixation in photosynthetic organisms
map01110 Biosynthesis of secondary metabolites
map00270 Cysteine and methionine metabolism
map00620 Pyruvate metabolism
map01210 2-Oxocarboxylic acid metabolism


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00330.21Aconitase2077101.60E-177
PF00694.20Aconitase_C8399666.10E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01681ACO, acnA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cyclemap00020
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation pathways in prokaryotesmap00720

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf249.561
SRR3591706second leaf82.529
SRR3591707mature leaf90.781
SRR3591708Shoot apex119.746
SRR3591709Stem160.974
SRR3591710White floral bud198.683
SRR3591711White flower206.083
SRR3591712Green floral bud218.710
SRR3591713Yellow flower186.783
SRP173429 SRR8316895Juvenile bud stage 107.497
SRR8316896Juvenile bud stage 161.133
SRR8316897Juvenile bud stage 79.918
SRR8316894Third green stage 73.512
SRR8316900Third green stage 243.713
SRR8316901Third green stage 228.142
SRR8316898Complete white stage 71.239
SRR8316899Complete white stage 207.402
SRR8316903Complete white stage 146.288
SRR8316902Silver flowering stage73.789
SRR8316904Silver flowering stage104.394
SRR8316905Silver flowering stage51.714
SRR8316906Gold flowering stage 163.982
SRR8316907Gold flowering stage 170.889
SRR8316908Gold flowering stage 172.296
SRP132670SRR6706286Control237.715
SRR6706287Light intensity 50%249.101
SRR6706288Light intensity 20%266.124
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1127.393
CNS0095593Slightly white alabastrum(diploid) 2132.484
CNS0095594Slightly white alabastrum(diploid) 3116.638
CNS0095595Whole white alabastrum(diploid) 2130.524
CNS0095596Whole white alabastrum(diploid) 3146.671
CNS0095597Whole white alabastrum(diploid) 4118.215
CNS0095598Silvery flower (diploied) 1111.232
CNS0095599Silvery flower (diploied) 2128.103
CNS0095600Silvery flower (diploied) 3217.470
CNS0095601Golden flower (diploid) 1106.648
CNS0095602Golden flower (diploid) 2200.228
CNS0095603Golden flower (diploid) 3193.479
CNS0095604Slightly white alabastrum(tetraploid) 1157.731
CNS0095605Slightly white alabastrum(tetraploid) 2132.685
CNS0095606Slightly white alabastrum(tetraploid) 3240.620
CNS0095607Whole white alabastrum(tetraploid) 1117.885
CNS0095608Whole white alabastrum(tetraploid) 2115.718
CNS0095609Whole white alabastrum(tetraploid) 3246.080
CNS0095610Silvery flower (tetraploid) 1225.915
CNS0095611Silvery flower (tetraploid) 2238.561
CNS0095612Silvery flower (tetraploid) 3184.522
CNS0095613Golden flower (tetraploid) 1109.633
CNS0095614Golden flower (tetraploid) 2201.601
CNS0095615Golden flower (tetraploid) 3125.602
CRA001975CRR073297Stem 1163.188
CRR073298Stem 2152.780
CRR073299Stem 3136.052
CRR073300Leaf 1212.313
CRR073301Leaf 2197.060
CRR073302Leaf 3169.913
CRR073303Juvenile bud 1192.276
CRR073304Juvenile bud 2151.144
CRR073305Juvenile bud 3262.011
CRR073306Third green 1111.591
CRR073307Third green 287.471
CRR073308Third green 3101.115
CRR073309Second white 1136.320
CRR073310Second white 293.054
CRR073311Second white 3114.644
CRR073312Silver flowering 1106.335
CRR073313Silver flowering 2117.059
CRR073314Silver flowering 3113.906
CRR073315Gold flowering 134.655
CRR073316Gold flowering 260.326
CRR073317Gold flowering 342.209
CRR073318Tawny withering 199.327
CRR073319Tawny withering 284.402
CRR073320Tawny withering 396.643