Detail information of GWHGAAZE027247


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010644099.10PREDICTED: DNA polymerase I B, chloroplastic/mitochondrial-like [Vitis vinifera]
COGYP_004901451.19E-51DNA polymerase I
Swissprottr|F4I6M1|POLIA_ARATH0DNA polymerase I A, chloroplastic/mitochondrial (Precursor)
trEMBLtr|F6H1W3|F6H1W3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46227.1}
TAIR10AT1G50840.10polymerase gamma 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1679279116797686-
GWHAAZE00000008mRNA1679279116797686-
GWHAAZE00000008exon1679279116792952-
GWHAAZE00000008exon1679360616793695-
GWHAAZE00000008exon1679379116794003-
GWHAAZE00000008exon1679431216794404-
GWHAAZE00000008exon1679456316794757-
GWHAAZE00000008exon1679486816794960-
GWHAAZE00000008exon1679516016795255-
GWHAAZE00000008exon1679538216795856-
GWHAAZE00000008exon1679593716796613-
GWHAAZE00000008exon1679672816796954-
GWHAAZE00000008exon1679705616797686-
GWHAAZE00000008CDS1679705616797686-
GWHAAZE00000008CDS1679672816796954-
GWHAAZE00000008CDS1679593716796613-
GWHAAZE00000008CDS1679538216795856-
GWHAAZE00000008CDS1679516016795255-
GWHAAZE00000008CDS1679486816794960-
GWHAAZE00000008CDS1679456316794757-
GWHAAZE00000008CDS1679431216794404-
GWHAAZE00000008CDS1679379116794003-
GWHAAZE00000008CDS1679360616793695-
GWHAAZE00000008CDS1679279116792952-
Transcript Sequence

Network for GWHGAAZE027247

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01612.21DNA_pol_A_exo12514157.30E-10
PF00476.21DNA_pol_A6549803.90E-71
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02335polA DNA replication map03030
Base excision repairmap03410
Nucleotide excision repairmap03420
Homologous recombinationmap03440

Gene Ontology

GO term OntologyName
GO:0006139biological_processnucleobase-containing compound metabolic process
GO:0006261biological_processDNA-dependent DNA replication
GO:0006260biological_processDNA replication
GO:0003676molecular_functionnucleic acid binding
GO:0008408molecular_function3'-5' exonuclease activity
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.466
SRR3591706second leaf4.922
SRR3591707mature leaf7.484
SRR3591708Shoot apex17.118
SRR3591709Stem8.721
SRR3591710White floral bud8.010
SRR3591711White flower16.812
SRR3591712Green floral bud11.851
SRR3591713Yellow flower12.109
SRP173429 SRR8316895Juvenile bud stage 6.389
SRR8316896Juvenile bud stage 7.976
SRR8316897Juvenile bud stage 3.955
SRR8316894Third green stage 4.019
SRR8316900Third green stage 12.215
SRR8316901Third green stage 8.080
SRR8316898Complete white stage 1.520
SRR8316899Complete white stage 10.705
SRR8316903Complete white stage 3.547
SRR8316902Silver flowering stage3.454
SRR8316904Silver flowering stage5.718
SRR8316905Silver flowering stage2.453
SRR8316906Gold flowering stage 7.950
SRR8316907Gold flowering stage 7.085
SRR8316908Gold flowering stage 9.507
SRP132670SRR6706286Control9.783
SRR6706287Light intensity 50%10.398
SRR6706288Light intensity 20%11.687
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.239
CNS0095593Slightly white alabastrum(diploid) 24.645
CNS0095594Slightly white alabastrum(diploid) 33.619
CNS0095595Whole white alabastrum(diploid) 23.954
CNS0095596Whole white alabastrum(diploid) 33.617
CNS0095597Whole white alabastrum(diploid) 42.991
CNS0095598Silvery flower (diploied) 18.593
CNS0095599Silvery flower (diploied) 24.183
CNS0095600Silvery flower (diploied) 39.472
CNS0095601Golden flower (diploid) 15.394
CNS0095602Golden flower (diploid) 28.584
CNS0095603Golden flower (diploid) 38.351
CNS0095604Slightly white alabastrum(tetraploid) 15.109
CNS0095605Slightly white alabastrum(tetraploid) 23.554
CNS0095606Slightly white alabastrum(tetraploid) 312.888
CNS0095607Whole white alabastrum(tetraploid) 12.187
CNS0095608Whole white alabastrum(tetraploid) 21.650
CNS0095609Whole white alabastrum(tetraploid) 37.689
CNS0095610Silvery flower (tetraploid) 110.445
CNS0095611Silvery flower (tetraploid) 210.942
CNS0095612Silvery flower (tetraploid) 36.820
CNS0095613Golden flower (tetraploid) 14.002
CNS0095614Golden flower (tetraploid) 28.053
CNS0095615Golden flower (tetraploid) 36.306
CRA001975CRR073297Stem 111.406
CRR073298Stem 210.323
CRR073299Stem 310.541
CRR073300Leaf 19.580
CRR073301Leaf 28.135
CRR073302Leaf 37.408
CRR073303Juvenile bud 19.020
CRR073304Juvenile bud 23.885
CRR073305Juvenile bud 38.140
CRR073306Third green 10.538
CRR073307Third green 20.465
CRR073308Third green 31.273
CRR073309Second white 14.287
CRR073310Second white 23.802
CRR073311Second white 33.903
CRR073312Silver flowering 13.191
CRR073313Silver flowering 24.597
CRR073314Silver flowering 33.128
CRR073315Gold flowering 118.269
CRR073316Gold flowering 229.886
CRR073317Gold flowering 315.508
CRR073318Tawny withering 17.308
CRR073319Tawny withering 25.202
CRR073320Tawny withering 39.041