Gene detail

Detail information of GWHGAAZE027225

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004505433.1	5.7426E-129	PREDICTED: transcription factor ILR3-like [Cicer arietinum]
Swissprot	tr\|Q9FH37\|ILR3_ARATH	2E-117	Transcription factor ILR3
trEMBL	tr\|B7FHK4\|B7FHK4_MEDTR	5E-128	Uncharacterized protein {ECO:0000313\|EMBL:AFK34575.1}
TAIR10	AT5G54680.1	6E-81	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	16541624	16543497	+
GWHAAZE00000008	mRNA	16541624	16543497	+
GWHAAZE00000008	exon	16541624	16541769	+
GWHAAZE00000008	exon	16542634	16542696	+
GWHAAZE00000008	exon	16542806	16542883	+
GWHAAZE00000008	exon	16542981	16543143	+
GWHAAZE00000008	exon	16543231	16543497	+
GWHAAZE00000008	CDS	16541624	16541769	+
GWHAAZE00000008	CDS	16542634	16542696	+
GWHAAZE00000008	CDS	16542806	16542883	+
GWHAAZE00000008	CDS	16542981	16543143	+
GWHAAZE00000008	CDS	16543231	16543497	+

Transcript Sequence
>GWHTAAZE027259 ATGGTTTCTCCGGAAAGCACCAATTGGCTCTATGATTACGGCTTGACTGATGATGATATAGCTGCTGTTCCTGGTCGCAATTTCTCTACTCCAGCTACTGGATTCAACTGGCCCCTCCCTCCCTTCAATTCTCTTTCTAACACCAGCGCGGAAATTGATGGTTCATTTGGGGATTCAGACTGCCACAAGGAACCTGGCTCAAAAAAGCGGGTAAGATCTGAATCGGGCATTGCATCAAGTTCCAAAGCATGCAGGGAGAAGTTGCGGAGGGATAGACTTAATGACAAGTTCATTGAATTGGGTTCAATCCTTGAGCCTGGGAGGTCTCCGAAAACAGACAAGTCTGCTATTTTAGTTGATGCCATTCGAATGGTGACTCAATTACGTAGTGAAGCCCAGAAATTGAAGGACTCAAATTCGAGTCTCCATGAGAAAATTAAAGAGCTAAAGTCTGAGAAGAACGAGCTTCGAGACGAAAAGCAGAGGTTAAAGGCCGAGAAAGAGAAGCTGGAGCAGCAAGTAAAGACCATGAATGCTCAACCAGGCTTCTTGCCCGGTCCACCTCCAATGCCCGCTGCATATGCCGCTCAAGGCCAAGCTCCGGGCAACAAATTGGTACCCATTATTAGCTACCCGGGAGTAGCCATGTGGCAGTTCATGCCACCTGCCGCAGTTGACACCTCACAGGATCACGTACTTCGCCCACCAGTCGCTTAA

Network for GWHGAAZE027225

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	81	128	2.30E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	94.334
	SRR3591706	second leaf	146.103
	SRR3591707	mature leaf	175.602
	SRR3591708	Shoot apex	87.252
	SRR3591709	Stem	150.397
	SRR3591710	White floral bud	108.521
	SRR3591711	White flower	139.150
	SRR3591712	Green floral bud	59.428
	SRR3591713	Yellow flower	95.882
SRP173429	SRR8316895	Juvenile bud stage	128.620
	SRR8316896	Juvenile bud stage	147.774
	SRR8316897	Juvenile bud stage	91.358
	SRR8316894	Third green stage	24.951
	SRR8316900	Third green stage	67.952
	SRR8316901	Third green stage	95.216
	SRR8316898	Complete white stage	47.000
	SRR8316899	Complete white stage	184.591
	SRR8316903	Complete white stage	81.415
	SRR8316902	Silver flowering stage	51.645
	SRR8316904	Silver flowering stage	61.383
	SRR8316905	Silver flowering stage	30.113
	SRR8316906	Gold flowering stage	97.006
	SRR8316907	Gold flowering stage	99.675
	SRR8316908	Gold flowering stage	86.979
SRP132670	SRR6706286	Control	76.549
	SRR6706287	Light intensity 50%	75.366
	SRR6706288	Light intensity 20%	77.103
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	83.189
	CNS0095593	Slightly white alabastrum(diploid) 2	119.823
	CNS0095594	Slightly white alabastrum(diploid) 3	102.512
	CNS0095595	Whole white alabastrum(diploid) 2	118.231
	CNS0095596	Whole white alabastrum(diploid) 3	52.773
	CNS0095597	Whole white alabastrum(diploid) 4	79.341
	CNS0095598	Silvery flower (diploied) 1	193.127
	CNS0095599	Silvery flower (diploied) 2	286.612
	CNS0095600	Silvery flower (diploied) 3	148.945
	CNS0095601	Golden flower (diploid) 1	216.809
	CNS0095602	Golden flower (diploid) 2	189.194
	CNS0095603	Golden flower (diploid) 3	177.130
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.745
	CNS0095605	Slightly white alabastrum(tetraploid) 2	60.589
	CNS0095606	Slightly white alabastrum(tetraploid) 3	95.785
	CNS0095607	Whole white alabastrum(tetraploid) 1	64.490
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.262
	CNS0095609	Whole white alabastrum(tetraploid) 3	55.562
	CNS0095610	Silvery flower (tetraploid) 1	116.366
	CNS0095611	Silvery flower (tetraploid) 2	108.936
	CNS0095612	Silvery flower (tetraploid) 3	70.886
	CNS0095613	Golden flower (tetraploid) 1	95.553
	CNS0095614	Golden flower (tetraploid) 2	89.244
	CNS0095615	Golden flower (tetraploid) 3	87.354
CRA001975	CRR073297	Stem 1	83.307
	CRR073298	Stem 2	81.945
	CRR073299	Stem 3	107.155
	CRR073300	Leaf 1	74.546
	CRR073301	Leaf 2	95.985
	CRR073302	Leaf 3	74.610
	CRR073303	Juvenile bud 1	88.068
	CRR073304	Juvenile bud 2	90.173
	CRR073305	Juvenile bud 3	138.872
	CRR073306	Third green 1	66.476
	CRR073307	Third green 2	67.110
	CRR073308	Third green 3	63.591
	CRR073309	Second white 1	80.204
	CRR073310	Second white 2	66.063
	CRR073311	Second white 3	56.408
	CRR073312	Silver flowering 1	60.923
	CRR073313	Silver flowering 2	67.037
	CRR073314	Silver flowering 3	51.255
	CRR073315	Gold flowering 1	150.376
	CRR073316	Gold flowering 2	176.683
	CRR073317	Gold flowering 3	194.508
	CRR073318	Tawny withering 1	146.992
	CRR073319	Tawny withering 2	285.940
	CRR073320	Tawny withering 3	148.511