Gene detail

Detail information of GWHGAAZE027205

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI20399.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q8L6Y1\|UBP14_ARATH	Ubiquitin carboxyl-terminal hydrolase 14
trEMBL	tr\|F6H2F7\|F6H2F7_VITVI	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT3G20630.1	ubiquitin-specific protease 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	16189554	16200050	-
GWHAAZE00000008	mRNA	16189554	16200050	-
GWHAAZE00000008	exon	16189554	16189899	-
GWHAAZE00000008	exon	16190694	16190820	-
GWHAAZE00000008	exon	16190918	16191042	-
GWHAAZE00000008	exon	16191131	16191301	-
GWHAAZE00000008	exon	16191580	16191669	-
GWHAAZE00000008	exon	16191778	16191866	-
GWHAAZE00000008	exon	16192125	16192247	-
GWHAAZE00000008	exon	16192319	16192376	-
GWHAAZE00000008	exon	16192453	16192651	-
GWHAAZE00000008	exon	16193203	16193283	-
GWHAAZE00000008	exon	16193429	16193470	-
GWHAAZE00000008	exon	16193566	16193620	-
GWHAAZE00000008	exon	16194433	16194510	-
GWHAAZE00000008	exon	16194632	16194688	-
GWHAAZE00000008	exon	16194807	16194940	-
GWHAAZE00000008	exon	16197064	16197163	-
GWHAAZE00000008	exon	16198078	16198433	-
GWHAAZE00000008	exon	16198531	16198643	-
GWHAAZE00000008	exon	16199816	16200050	-
GWHAAZE00000008	CDS	16199816	16200050	-
GWHAAZE00000008	CDS	16198531	16198643	-
GWHAAZE00000008	CDS	16198078	16198433	-
GWHAAZE00000008	CDS	16197064	16197163	-
GWHAAZE00000008	CDS	16194807	16194940	-
GWHAAZE00000008	CDS	16194632	16194688	-
GWHAAZE00000008	CDS	16194433	16194510	-
GWHAAZE00000008	CDS	16193566	16193620	-
GWHAAZE00000008	CDS	16193429	16193470	-
GWHAAZE00000008	CDS	16193203	16193283	-
GWHAAZE00000008	CDS	16192453	16192651	-
GWHAAZE00000008	CDS	16192319	16192376	-
GWHAAZE00000008	CDS	16192125	16192247	-
GWHAAZE00000008	CDS	16191778	16191866	-
GWHAAZE00000008	CDS	16191580	16191669	-
GWHAAZE00000008	CDS	16191131	16191301	-
GWHAAZE00000008	CDS	16190918	16191042	-
GWHAAZE00000008	CDS	16190694	16190820	-
GWHAAZE00000008	CDS	16189721	16189899	-
GWHAAZE00000008	three_prime_UTR	16189554	16189720	-

Transcript Sequence
>GWHTAAZE027239 ATGCTTTCATTTGATGCCATGTTTTGTGATGTTTATTCTGATGCGTCATTGCGGTGTTTTCAGAAATCTGAAGGTGGGTTGTTCGTTGATATGAATACGTTTCTTGCCTTTGGGAGGGATTGTGTCGGTTGGAATGTTGAGAAGACTGGCAACCCAGTTTACTTACATATAAAGCAGACTAAGAAGCTTGTTCCTGAAGACAGACCTTTGAAGAAACCAACTCTCTTGGCTATAGGTGTAGACGGAGGATTTGACAACCATGAGCCTGAATATGATGAAACTTACAGTATAGTCATTTTGCCAGATTATGTTACTCTTCCTTTTCCATCAGTGGAGTTGCCGGAGAAGGTACGGTTGGCTGTTGATGCTATCTTAATGGCTGAGGGTGCTGAGCGTAAAGAGCAGCTTGCATCTTGGACTGCTGATAACAAGCAAATTAGTCAATACGCCTTGAATCTGCAACAAATTGACAATGGTGTTGTTGTTCCTCCATCTGGATGGAGATGTGCCAAGTGTGACAAGACCGACAACCTTTGGCTAAATTTAACCGATGGAATGATTCTCTGTGGCAGGAAAAATTGGGATGGAACTGGTGGGAACAACCATGCAGTTGGACATTACAATGATACAGGCTACCCTCTTGCTGTAAAGCTTGGGACCATAACTTCTGATTTGGAGGGGGCAGGTAATGCCACCTTGCTTCTCTCAGATGTTTTTTCATATCCGGAGGACGAAAGTGTTTCTGACCCACATTTAGCTCAGCACCTTGCATTTTTTGGTATTGATTTTTCATCCTTACAAAAGACTGAAATGACAACTGCTGAAAGGGAACTTGATCAGAACACTAATTTTGATTGGAATCGGATTCAAGAAAGTGGTCAGGAAGTTGAACCACTATTTGGACCAGGTTTTACGGGACTTGTAAATCTTGGCAACAGTTGCTACCTGGCTGCTACCATGCAAATTGTTTTCTCAACTCATTCCTTCTGTTCACGGTATTACATGAACCAAAGTTTGAAAGAGGCATTTGATATTGCTCCCGCTGATCCAACCGTAGACCTGAACACACAATTAACGAAACTTGCTCATGGTTTGCTCAGTGGTAAATATTCAGTTCCAACTCCAGTGAAAGATGAAAATGCCAATGCTACAAACTTGACTTCAAATGTTAAGCAAGATGGTATTCCTCCCCGTATGTTCAAGGCTGTAATTGCTGCCAGTCACCCTGAGTTTTCAACTATGAGACAACAGGATGCCTTAGAGTTCTTCTTACATTTTATCGATCAAGTTGAACGAATTAATGCTGGGAACCCTCTACTGGATTCTTCAAGGAGTTTCAAGTTTGGTATTGAAGAGCGACTTGAATGTCCGTCGGGCAAAGTTGCTTACAATAAGCGGCAAGACTATATTCTTTCCCTAAATATCCCACTTCATAAAGCCACTAACAGAAAAGAACTGGAAGACTTTCAAAAACTGAAGACGGAAAAGACTGCGGAAGGGAAGGAAGTGTCTGCTGATGAAATTGTTCGCCCAAGGGTACCTCTAAAGGATTGTCTGGAGAGCTTTTCATCTCAGGAAGAGGTGCATGATTTTTATAGCACCGCCTTGAAGGCCAAGACAACAGCATTGAAAACTGCAGGCCTGACTTCATTTCCTGATTATCTGGTGTTGCATATGAGAAAATTCGTCATGGAGGAAGGCTGGGTGCCAAAAAAGCTTGATGTCTATATAGATGTTCCTGATACGATAGACGTCAGTTTCATGCGCAGCAATGGTCTTCAGCCTGGGGAAGAGGTGTTACCAGACGCTGCTGCTGGGGGTGAGGTGGAACCAAAAATGCTTTTGGCAAATGAGGATATTGTTTCACAGTTGGCGTCGATGGGATTTAACTATCTTCATTGTCAAAAGGCTGCCATCAAAACCTCAAATGCTGGAGTGGAAGAGGCCATGAACTGGTTACTTTCCCACATGGATGACCCAGATATTGATGCTCCCCTGTCCATGGAGACGCAAGGTGAGGAGGTTCTGTTTGATCAATCGAAAGTTGATACTTTGGTTTCGTTTGGTTTCCAAGAAGAAATAGCATGGAGGGCACTGAAGGCATCGGGTGGTGATATTGAGAAAGCTACGGATTGGATATTTAGTGCTGATGCTGCTTCTGGTTCAACCGATATGGATGCTACATCAAGCACTACACCAGCGGTTGATGCTCCACTTCCTGATGGAGGAGGAAAGTACAGGCTTCTTGGTCTAGTGAGCCACATGGGTACCTCTACTCAGTGTGGCCACTATGTTGCTCATATCTACAAAAATGGGAGGTGGGTTATTTTCAATGACGAAAAGGTTGGAGCTTCTAAAGACCCCCCAAAGGACATGGGGTACCTCTACTTCTTTGAAAGAATCAACAGTTGATACACATAGGAAAGAGATACAAAGCTGAAAGACCTTAGGCAATCAACAATTGAAATTGAAGCAGCAAATTTCGGGGAATCTTACAAACCATGTGATGACATTCCCATGAAATGGCTTTGAACTAGTGTTTTCTGGTGCGGTAGATTTTTTTTGCCAGTTTGCTGCTT

Network for GWHGAAZE027205

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17807.2	zf-UBP_var	11	62	8.10E-12
PF02148.20	zf-UBP	169	251	1.50E-14
PF00443.30	UCH	305	798	5.90E-40
PF00627.32	UBA	617	653	7.00E-05
PF00627.32	UBA	678	713	4.40E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0016579	biological_process	protein deubiquitination
GO:0008270	molecular_function	zinc ion binding
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity
GO:0005515	molecular_function	protein binding
GO:0004843	molecular_function	thiol-dependent ubiquitin-specific protease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	72.960
	SRR3591706	second leaf	34.979
	SRR3591707	mature leaf	30.272
	SRR3591708	Shoot apex	53.871
	SRR3591709	Stem	58.102
	SRR3591710	White floral bud	61.427
	SRR3591711	White flower	75.695
	SRR3591712	Green floral bud	57.804
	SRR3591713	Yellow flower	69.852
SRP173429	SRR8316895	Juvenile bud stage	31.039
	SRR8316896	Juvenile bud stage	42.439
	SRR8316897	Juvenile bud stage	22.341
	SRR8316894	Third green stage	17.312
	SRR8316900	Third green stage	47.840
	SRR8316901	Third green stage	43.271
	SRR8316898	Complete white stage	14.623
	SRR8316899	Complete white stage	54.784
	SRR8316903	Complete white stage	26.358
	SRR8316902	Silver flowering stage	13.776
	SRR8316904	Silver flowering stage	20.526
	SRR8316905	Silver flowering stage	8.783
	SRR8316906	Gold flowering stage	32.053
	SRR8316907	Gold flowering stage	32.441
	SRR8316908	Gold flowering stage	37.113
SRP132670	SRR6706286	Control	33.082
	SRR6706287	Light intensity 50%	36.622
	SRR6706288	Light intensity 20%	37.565
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.360
	CNS0095593	Slightly white alabastrum(diploid) 2	33.672
	CNS0095594	Slightly white alabastrum(diploid) 3	33.384
	CNS0095595	Whole white alabastrum(diploid) 2	29.393
	CNS0095596	Whole white alabastrum(diploid) 3	29.059
	CNS0095597	Whole white alabastrum(diploid) 4	26.431
	CNS0095598	Silvery flower (diploied) 1	24.590
	CNS0095599	Silvery flower (diploied) 2	25.568
	CNS0095600	Silvery flower (diploied) 3	40.540
	CNS0095601	Golden flower (diploid) 1	25.302
	CNS0095602	Golden flower (diploid) 2	35.318
	CNS0095603	Golden flower (diploid) 3	33.393
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.644
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.496
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.813
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.929
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.244
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.772
	CNS0095610	Silvery flower (tetraploid) 1	48.532
	CNS0095611	Silvery flower (tetraploid) 2	43.884
	CNS0095612	Silvery flower (tetraploid) 3	42.989
	CNS0095613	Golden flower (tetraploid) 1	25.404
	CNS0095614	Golden flower (tetraploid) 2	38.281
	CNS0095615	Golden flower (tetraploid) 3	30.132
CRA001975	CRR073297	Stem 1	41.487
	CRR073298	Stem 2	39.628
	CRR073299	Stem 3	36.574
	CRR073300	Leaf 1	49.312
	CRR073301	Leaf 2	45.234
	CRR073302	Leaf 3	35.463
	CRR073303	Juvenile bud 1	38.584
	CRR073304	Juvenile bud 2	27.599
	CRR073305	Juvenile bud 3	50.753
	CRR073306	Third green 1	15.706
	CRR073307	Third green 2	10.968
	CRR073308	Third green 3	15.098
	CRR073309	Second white 1	22.801
	CRR073310	Second white 2	19.298
	CRR073311	Second white 3	20.549
	CRR073312	Silver flowering 1	19.827
	CRR073313	Silver flowering 2	19.616
	CRR073314	Silver flowering 3	16.461
	CRR073315	Gold flowering 1	14.195
	CRR073316	Gold flowering 2	19.276
	CRR073317	Gold flowering 3	14.687
	CRR073318	Tawny withering 1	30.378
	CRR073319	Tawny withering 2	27.285
	CRR073320	Tawny withering 3	31.484