Detail information of GWHGAAZE027198


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002281726.10PREDICTED: double-strand break repair protein MRE11 isoform X2 [Vitis vinifera]
COGYP_002728005.13E-14DNA repair exonuclease
Swissprottr|Q9XGM2|MRE11_ARATH0Double-strand break repair protein MRE11
trEMBLtr|E0CST0|E0CST0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI20379.3}
TAIR10AT5G54260.10DNA repair and meiosis protein (Mre11)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1606619016077957-
GWHAAZE00000008mRNA1606619016077957-
GWHAAZE00000008exon1607792216077957-
GWHAAZE00000008exon1607771116077817-
GWHAAZE00000008exon1607649716076538-
GWHAAZE00000008exon1607581616075951-
GWHAAZE00000008exon1607531116075468-
GWHAAZE00000008exon1607402116074111-
GWHAAZE00000008exon1607238816072507-
GWHAAZE00000008exon1607222516072293-
GWHAAZE00000008exon1607203816072129-
GWHAAZE00000008exon1607184916071951-
GWHAAZE00000008exon1607166216071769-
GWHAAZE00000008exon1607125016071321-
GWHAAZE00000008exon1607108116071158-
GWHAAZE00000008exon1607087716070939-
GWHAAZE00000008exon1607072416070784-
GWHAAZE00000008exon1607006816070150-
GWHAAZE00000008exon1606953316069646-
GWHAAZE00000008exon1606889316068961-
GWHAAZE00000008exon1606855216068796-
GWHAAZE00000008exon1606832216068357-
GWHAAZE00000008exon1606811216068223-
GWHAAZE00000008exon1606640216066599-
GWHAAZE00000008exon1606619016066222-
GWHAAZE00000008five_prime_UTR1607792216077957-
GWHAAZE00000008five_prime_UTR1607771116077817-
GWHAAZE00000008five_prime_UTR1607651416076538-
GWHAAZE00000008CDS1607649716076513-
GWHAAZE00000008CDS1607581616075951-
GWHAAZE00000008CDS1607531116075468-
GWHAAZE00000008CDS1607402116074111-
GWHAAZE00000008CDS1607238816072507-
GWHAAZE00000008CDS1607222516072293-
GWHAAZE00000008CDS1607203816072129-
GWHAAZE00000008CDS1607184916071951-
GWHAAZE00000008CDS1607166216071769-
GWHAAZE00000008CDS1607125016071321-
GWHAAZE00000008CDS1607108116071158-
GWHAAZE00000008CDS1607087716070939-
GWHAAZE00000008CDS1607072416070784-
GWHAAZE00000008CDS1607006816070150-
GWHAAZE00000008CDS1606953316069646-
GWHAAZE00000008CDS1606889316068961-
GWHAAZE00000008CDS1606855216068796-
GWHAAZE00000008CDS1606832216068357-
GWHAAZE00000008CDS1606811216068223-
GWHAAZE00000008CDS1606640216066599-
GWHAAZE00000008CDS1606619016066222-
Transcript Sequence

Network for GWHGAAZE027198

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00149.29Metallophos142571.40E-13
PF04152.15Mre11_DNA_bind2984344.20E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10865MRE11 Homologous recombination map03440
Non-homologous end-joiningmap03450
Cellular senescencemap04218

Gene Ontology

GO term OntologyName
GO:0006302biological_processdouble-strand break repair
GO:0005634cellular_componentnucleus
GO:0030870cellular_componentMre11 complex
GO:0004519molecular_functionendonuclease activity
GO:0030145molecular_functionmanganese ion binding
GO:0016787molecular_functionhydrolase activity
GO:0008408molecular_function3'-5' exonuclease activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.531
SRR3591706second leaf6.546
SRR3591707mature leaf7.775
SRR3591708Shoot apex17.884
SRR3591709Stem17.696
SRR3591710White floral bud12.773
SRR3591711White flower15.511
SRR3591712Green floral bud11.131
SRR3591713Yellow flower12.195
SRP173429 SRR8316895Juvenile bud stage 10.664
SRR8316896Juvenile bud stage 15.268
SRR8316897Juvenile bud stage 6.588
SRR8316894Third green stage 5.856
SRR8316900Third green stage 17.233
SRR8316901Third green stage 14.392
SRR8316898Complete white stage 4.316
SRR8316899Complete white stage 24.429
SRR8316903Complete white stage 11.256
SRR8316902Silver flowering stage5.521
SRR8316904Silver flowering stage7.399
SRR8316905Silver flowering stage4.678
SRR8316906Gold flowering stage 10.594
SRR8316907Gold flowering stage 11.004
SRR8316908Gold flowering stage 11.817
SRP132670SRR6706286Control12.992
SRR6706287Light intensity 50%14.323
SRR6706288Light intensity 20%15.762
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.968
CNS0095593Slightly white alabastrum(diploid) 27.304
CNS0095594Slightly white alabastrum(diploid) 35.856
CNS0095595Whole white alabastrum(diploid) 26.693
CNS0095596Whole white alabastrum(diploid) 34.933
CNS0095597Whole white alabastrum(diploid) 45.603
CNS0095598Silvery flower (diploied) 111.911
CNS0095599Silvery flower (diploied) 210.026
CNS0095600Silvery flower (diploied) 39.415
CNS0095601Golden flower (diploid) 110.477
CNS0095602Golden flower (diploid) 27.779
CNS0095603Golden flower (diploid) 37.455
CNS0095604Slightly white alabastrum(tetraploid) 17.085
CNS0095605Slightly white alabastrum(tetraploid) 24.865
CNS0095606Slightly white alabastrum(tetraploid) 312.572
CNS0095607Whole white alabastrum(tetraploid) 15.204
CNS0095608Whole white alabastrum(tetraploid) 22.767
CNS0095609Whole white alabastrum(tetraploid) 36.597
CNS0095610Silvery flower (tetraploid) 115.390
CNS0095611Silvery flower (tetraploid) 212.304
CNS0095612Silvery flower (tetraploid) 36.376
CNS0095613Golden flower (tetraploid) 16.106
CNS0095614Golden flower (tetraploid) 210.203
CNS0095615Golden flower (tetraploid) 36.040
CRA001975CRR073297Stem 19.926
CRR073298Stem 29.081
CRR073299Stem 35.210
CRR073300Leaf 19.328
CRR073301Leaf 28.890
CRR073302Leaf 34.048
CRR073303Juvenile bud 16.258
CRR073304Juvenile bud 23.415
CRR073305Juvenile bud 35.840
CRR073306Third green 10.543
CRR073307Third green 20.426
CRR073308Third green 30.775
CRR073309Second white 10.395
CRR073310Second white 20.506
CRR073311Second white 30.429
CRR073312Silver flowering 10.051
CRR073313Silver flowering 20.105
CRR073314Silver flowering 30.499
CRR073315Gold flowering 10.570
CRR073316Gold flowering 22.757
CRR073317Gold flowering 30.523
CRR073318Tawny withering 15.836
CRR073319Tawny withering 27.046
CRR073320Tawny withering 35.334