Detail information of GWHGAAZE027196


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011098362.10PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Sesamum indicum]
Swissprottr|P27489|CB23_SOLLC0Chlorophyll a-b binding protein 13, chloroplastic (Precursor)
trEMBLtr|A0A076L1Y1|A0A076L1Y1_TOBAC0Chlorophyll a-b binding protein 13, chloroplastic-like protein {ECO:0000313|EMBL:AII99807.1}
TAIR10AT5G54270.11E-135light-harvesting chlorophyll B-binding protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1605630416057581-
GWHAAZE00000008mRNA1605630416057581-
GWHAAZE00000008exon1605630416056813-
GWHAAZE00000008exon1605714416057305-
GWHAAZE00000008exon1605745316057581-
GWHAAZE00000008CDS1605745316057581-
GWHAAZE00000008CDS1605714416057305-
GWHAAZE00000008CDS1605630416056813-
Transcript Sequence

Network for GWHGAAZE027196

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00504.22Chloroa_b-bind652327.50E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08914LHCB3 Metabolic pathways map01100
Photosynthesis - antenna proteinsmap00196

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf951.086
SRR3591706second leaf5713.302
SRR3591707mature leaf3732.680
SRR3591708Shoot apex2157.832
SRR3591709Stem623.907
SRR3591710White floral bud53.500
SRR3591711White flower82.113
SRR3591712Green floral bud46.386
SRR3591713Yellow flower13.618
SRP173429 SRR8316895Juvenile bud stage 256.038
SRR8316896Juvenile bud stage 178.275
SRR8316897Juvenile bud stage 138.082
SRR8316894Third green stage 57.585
SRR8316900Third green stage 58.081
SRR8316901Third green stage 63.274
SRR8316898Complete white stage 14.789
SRR8316899Complete white stage 50.779
SRR8316903Complete white stage 30.301
SRR8316902Silver flowering stage6.969
SRR8316904Silver flowering stage13.825
SRR8316905Silver flowering stage4.356
SRR8316906Gold flowering stage 7.135
SRR8316907Gold flowering stage 6.592
SRR8316908Gold flowering stage 10.174
SRP132670SRR6706286Control90.779
SRR6706287Light intensity 50%56.710
SRR6706288Light intensity 20%48.804
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1165.965
CNS0095593Slightly white alabastrum(diploid) 2102.885
CNS0095594Slightly white alabastrum(diploid) 3127.947
CNS0095595Whole white alabastrum(diploid) 263.258
CNS0095596Whole white alabastrum(diploid) 348.842
CNS0095597Whole white alabastrum(diploid) 439.547
CNS0095598Silvery flower (diploied) 1248.449
CNS0095599Silvery flower (diploied) 2288.422
CNS0095600Silvery flower (diploied) 366.876
CNS0095601Golden flower (diploid) 1307.630
CNS0095602Golden flower (diploid) 2165.623
CNS0095603Golden flower (diploid) 3163.507
CNS0095604Slightly white alabastrum(tetraploid) 1148.315
CNS0095605Slightly white alabastrum(tetraploid) 2178.409
CNS0095606Slightly white alabastrum(tetraploid) 3233.290
CNS0095607Whole white alabastrum(tetraploid) 171.855
CNS0095608Whole white alabastrum(tetraploid) 235.660
CNS0095609Whole white alabastrum(tetraploid) 374.686
CNS0095610Silvery flower (tetraploid) 147.221
CNS0095611Silvery flower (tetraploid) 277.878
CNS0095612Silvery flower (tetraploid) 315.615
CNS0095613Golden flower (tetraploid) 126.720
CNS0095614Golden flower (tetraploid) 255.563
CNS0095615Golden flower (tetraploid) 329.573
CRA001975CRR073297Stem 1104.693
CRR073298Stem 289.635
CRR073299Stem 3181.637
CRR073300Leaf 112.027
CRR073301Leaf 211.827
CRR073302Leaf 315.549
CRR073303Juvenile bud 19.140
CRR073304Juvenile bud 25.762
CRR073305Juvenile bud 38.972
CRR073306Third green 16.193
CRR073307Third green 27.748
CRR073308Third green 310.418
CRR073309Second white 14.823
CRR073310Second white 23.183
CRR073311Second white 32.389
CRR073312Silver flowering 13.599
CRR073313Silver flowering 25.563
CRR073314Silver flowering 33.347
CRR073315Gold flowering 1757.290
CRR073316Gold flowering 2564.199
CRR073317Gold flowering 3842.877
CRR073318Tawny withering 1101.408
CRR073319Tawny withering 268.650
CRR073320Tawny withering 384.497