Detail information of GWHGAAZE027193


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010278370.11.07698E-47PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X2 [Nelumbo nucifera]
Swissprottr|Q9FL69|AGD5_ARATH1E-24Probable ADP-ribosylation factor GTPase-activating protein AGD5
trEMBLtr|A0A067KRU5|A0A067KRU5_JATCU3E-45Uncharacterized protein {ECO:0000313|EMBL:KDP38941.1}
TAIR10AT5G54310.10.000001ARF-GAP domain 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1601252916013991+
GWHAAZE00000008mRNA1601252916013991+
GWHAAZE00000008exon1601252916012771+
GWHAAZE00000008exon1601285616012914+
GWHAAZE00000008exon1601383216013991+
GWHAAZE00000008CDS1601252916012771+
GWHAAZE00000008CDS1601285616012914+
GWHAAZE00000008CDS1601383216013991+
Transcript Sequence

Network for GWHGAAZE027193

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12486SMAP Endocytosis map04144

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf80.658
SRR3591706second leaf32.828
SRR3591707mature leaf26.781
SRR3591708Shoot apex58.160
SRR3591709Stem70.156
SRR3591710White floral bud112.467
SRR3591711White flower53.661
SRR3591712Green floral bud120.701
SRR3591713Yellow flower50.458
SRP173429 SRR8316895Juvenile bud stage 39.982
SRR8316896Juvenile bud stage 63.980
SRR8316897Juvenile bud stage 29.289
SRR8316894Third green stage 26.744
SRR8316900Third green stage 103.129
SRR8316901Third green stage 98.395
SRR8316898Complete white stage 23.724
SRR8316899Complete white stage 70.558
SRR8316903Complete white stage 32.870
SRR8316902Silver flowering stage22.873
SRR8316904Silver flowering stage24.534
SRR8316905Silver flowering stage11.541
SRR8316906Gold flowering stage 29.240
SRR8316907Gold flowering stage 33.632
SRR8316908Gold flowering stage 23.848
SRP132670SRR6706286Control82.537
SRR6706287Light intensity 50%87.458
SRR6706288Light intensity 20%89.603
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1116.016
CNS0095593Slightly white alabastrum(diploid) 2116.747
CNS0095594Slightly white alabastrum(diploid) 3121.412
CNS0095595Whole white alabastrum(diploid) 2176.843
CNS0095596Whole white alabastrum(diploid) 3197.589
CNS0095597Whole white alabastrum(diploid) 4205.076
CNS0095598Silvery flower (diploied) 143.180
CNS0095599Silvery flower (diploied) 247.442
CNS0095600Silvery flower (diploied) 345.548
CNS0095601Golden flower (diploid) 155.163
CNS0095602Golden flower (diploid) 251.144
CNS0095603Golden flower (diploid) 346.117
CNS0095604Slightly white alabastrum(tetraploid) 1104.849
CNS0095605Slightly white alabastrum(tetraploid) 2117.639
CNS0095606Slightly white alabastrum(tetraploid) 351.500
CNS0095607Whole white alabastrum(tetraploid) 1198.517
CNS0095608Whole white alabastrum(tetraploid) 2213.036
CNS0095609Whole white alabastrum(tetraploid) 3107.812
CNS0095610Silvery flower (tetraploid) 131.328
CNS0095611Silvery flower (tetraploid) 237.068
CNS0095612Silvery flower (tetraploid) 338.043
CNS0095613Golden flower (tetraploid) 122.617
CNS0095614Golden flower (tetraploid) 230.476
CNS0095615Golden flower (tetraploid) 330.268
CRA001975CRR073297Stem 160.986
CRR073298Stem 258.920
CRR073299Stem 345.136
CRR073300Leaf 198.279
CRR073301Leaf 277.426
CRR073302Leaf 351.119
CRR073303Juvenile bud 173.624
CRR073304Juvenile bud 260.161
CRR073305Juvenile bud 368.068
CRR073306Third green 142.833
CRR073307Third green 238.783
CRR073308Third green 343.046
CRR073309Second white 116.269
CRR073310Second white 219.439
CRR073311Second white 314.001
CRR073312Silver flowering 121.697
CRR073313Silver flowering 228.426
CRR073314Silver flowering 317.532
CRR073315Gold flowering 123.010
CRR073316Gold flowering 228.418
CRR073317Gold flowering 318.169
CRR073318Tawny withering 156.270
CRR073319Tawny withering 256.990
CRR073320Tawny withering 350.838