Detail information of GWHGAAZE027192


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003634688.11.6488E-145PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Vitis vinifera]
Swissprottr|Q9FL69|AGD5_ARATH6E-112Probable ADP-ribosylation factor GTPase-activating protein AGD5
trEMBLtr|E0CSS0|E0CSS0_VITVI6E-146Putative uncharacterized protein {ECO:0000313|EMBL:CBI20369.3}
TAIR10AT5G54310.17E-80ARF-GAP domain 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1599939916005646+
GWHAAZE00000008mRNA1599939916005646+
GWHAAZE00000008exon1599939915999449+
GWHAAZE00000008exon1600102716001085+
GWHAAZE00000008exon1600289916002989+
GWHAAZE00000008exon1600413416004188+
GWHAAZE00000008exon1600430016004390+
GWHAAZE00000008exon1600451416004733+
GWHAAZE00000008exon1600491316005099+
GWHAAZE00000008exon1600528216005646+
GWHAAZE00000008CDS1599939915999449+
GWHAAZE00000008CDS1600102716001085+
GWHAAZE00000008CDS1600289916002989+
GWHAAZE00000008CDS1600413416004188+
GWHAAZE00000008CDS1600430016004390+
GWHAAZE00000008CDS1600451416004733+
GWHAAZE00000008CDS1600491316005099+
GWHAAZE00000008CDS1600528216005646+
Transcript Sequence

Network for GWHGAAZE027192

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01412.19ArfGap171257.20E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12486SMAP Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0005096molecular_functionGTPase activator activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf58.669
SRR3591706second leaf27.654
SRR3591707mature leaf18.298
SRR3591708Shoot apex40.905
SRR3591709Stem49.619
SRR3591710White floral bud82.492
SRR3591711White flower38.896
SRR3591712Green floral bud81.746
SRR3591713Yellow flower35.456
SRP173429 SRR8316895Juvenile bud stage 29.179
SRR8316896Juvenile bud stage 52.261
SRR8316897Juvenile bud stage 24.121
SRR8316894Third green stage 25.557
SRR8316900Third green stage 80.520
SRR8316901Third green stage 74.853
SRR8316898Complete white stage 22.115
SRR8316899Complete white stage 54.913
SRR8316903Complete white stage 35.824
SRR8316902Silver flowering stage15.899
SRR8316904Silver flowering stage24.489
SRR8316905Silver flowering stage12.259
SRR8316906Gold flowering stage 28.825
SRR8316907Gold flowering stage 29.092
SRR8316908Gold flowering stage 25.889
SRP132670SRR6706286Control81.369
SRR6706287Light intensity 50%77.702
SRR6706288Light intensity 20%77.500
CNP0000432CNS0095592Slightly white alabastrum(diploid) 148.823
CNS0095593Slightly white alabastrum(diploid) 251.232
CNS0095594Slightly white alabastrum(diploid) 353.497
CNS0095595Whole white alabastrum(diploid) 297.037
CNS0095596Whole white alabastrum(diploid) 3113.456
CNS0095597Whole white alabastrum(diploid) 4114.015
CNS0095598Silvery flower (diploied) 127.791
CNS0095599Silvery flower (diploied) 231.634
CNS0095600Silvery flower (diploied) 341.236
CNS0095601Golden flower (diploid) 126.451
CNS0095602Golden flower (diploid) 237.378
CNS0095603Golden flower (diploid) 339.002
CNS0095604Slightly white alabastrum(tetraploid) 171.401
CNS0095605Slightly white alabastrum(tetraploid) 274.808
CNS0095606Slightly white alabastrum(tetraploid) 334.509
CNS0095607Whole white alabastrum(tetraploid) 1120.345
CNS0095608Whole white alabastrum(tetraploid) 2122.395
CNS0095609Whole white alabastrum(tetraploid) 376.344
CNS0095610Silvery flower (tetraploid) 122.311
CNS0095611Silvery flower (tetraploid) 232.418
CNS0095612Silvery flower (tetraploid) 330.153
CNS0095613Golden flower (tetraploid) 111.151
CNS0095614Golden flower (tetraploid) 218.912
CNS0095615Golden flower (tetraploid) 331.132
CRA001975CRR073297Stem 160.119
CRR073298Stem 258.766
CRR073299Stem 342.160
CRR073300Leaf 187.083
CRR073301Leaf 264.752
CRR073302Leaf 353.812
CRR073303Juvenile bud 174.767
CRR073304Juvenile bud 251.253
CRR073305Juvenile bud 355.747
CRR073306Third green 135.475
CRR073307Third green 230.636
CRR073308Third green 335.789
CRR073309Second white 113.540
CRR073310Second white 218.691
CRR073311Second white 318.037
CRR073312Silver flowering 128.264
CRR073313Silver flowering 236.361
CRR073314Silver flowering 325.981
CRR073315Gold flowering 129.305
CRR073316Gold flowering 225.382
CRR073317Gold flowering 315.021
CRR073318Tawny withering 146.362
CRR073319Tawny withering 229.877
CRR073320Tawny withering 355.726